Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2430

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2429: 10797 - K03347 CUL1, CDC53 cullin 1, at 102257 to 105935 10797 mRNA_2430: 10798 - K09467 MIG zinc-finger protein CreA/MIG, at 106611 to 109400 10798 mRNA_2431: 10799 - Hypothetical Protein, at 109919 to 110380 10799

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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105,976 - 0.3
105,999 - 0.0
106,213 + -0.8
106,791 + -3.3
106,848 + -4.2
106,850 - -5.9
106,925 - 10798 mRNA_2430 0.11 -1.2
107,029 + 10798 mRNA_2430 0.15 -2.0
107,201 + 10798 mRNA_2430 0.21 -0.0
107,278 + 10798 mRNA_2430 0.24 -2.8
107,353 - 10798 mRNA_2430 0.27 -0.1
107,604 + 10798 mRNA_2430 0.36 -4.2
107,676 + 10798 mRNA_2430 0.38 -3.3
107,744 + 10798 mRNA_2430 0.41 -4.3
107,801 + 10798 mRNA_2430 0.43 -1.8
108,058 + 10798 mRNA_2430 0.52 -1.8
108,061 + 10798 mRNA_2430 0.52 -3.3
108,113 + 10798 mRNA_2430 0.54 -4.8
108,182 + 10798 mRNA_2430 0.56 -1.4
108,199 - 10798 mRNA_2430 0.57 -3.2
108,903 - 10798 mRNA_2430 0.82 -5.0
109,052 - 10798 mRNA_2430 0.87 -3.7
109,064 + 10798 mRNA_2430 0.88 -4.0
109,069 + 10798 mRNA_2430 0.88 -1.2
109,198 - -5.4
109,221 - -1.9
109,252 + -0.0
109,362 - -4.5
109,374 + -2.3
109,380 + -0.7
109,382 + -0.0
109,396 + -3.6
109,405 - -3.7
109,521 - -2.9
109,534 + -0.1
109,551 + 1.5
109,651 - -0.8
109,654 - 0.4
109,657 - 0.6
109,665 - 0.4
109,674 - 0.5
109,674 + 0.1
109,675 + -0.6
109,678 - -0.2
109,680 - 0.6
109,680 - -1.3
109,685 + -1.3
109,689 - -0.5
109,693 - -0.2
109,699 + -0.0
109,700 - 0.1
109,704 - 0.4
109,708 + 0.1
109,710 + -0.9
109,826 - 0.4
109,833 + 0.8
109,850 - 0.4
109,856 - 1.2
109,986 - 10799 mRNA_2431 0.15 0.5
110,000 - 10799 mRNA_2431 0.18 0.5
110,006 + 10799 mRNA_2431 0.19 -1.4
110,013 + 10799 mRNA_2431 0.20 -0.0
110,033 - 10799 mRNA_2431 0.25 0.6
110,038 + 10799 mRNA_2431 0.26 -0.3
110,050 - 10799 mRNA_2431 0.28 0.2
110,055 - 10799 mRNA_2431 0.29 0.1
110,164 + 10799 mRNA_2431 0.53 1.7