Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2395

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2394: 10762 - K03648 UNG, UDG uracil-DNA glycosylase, at 15133 to 16619 10762 mRNA_2395: 10763 - SMART-catalytic domain of ctd-like phosphatases-SM00577, at 16868 to 18999 10763 mRNA_2396: 10764 - K14169 CTU2, NCS2 cytoplasmic tRNA 2-thiolation protein 2, at 19108 to 21174 10764

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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16,094 + 10762 mRNA_2394 0.65 -1.8
16,110 - 10762 mRNA_2394 0.66 0.9
16,264 + 10762 mRNA_2394 0.76 -0.2
16,274 - 10762 mRNA_2394 0.77 0.4
16,317 + 10762 mRNA_2394 0.80 -0.7
16,323 + 10762 mRNA_2394 0.80 -0.3
16,329 - 10762 mRNA_2394 0.80 -0.4
16,375 + 10762 mRNA_2394 0.84 -1.2
16,439 - 10762 mRNA_2394 0.88 0.6
16,469 + 10762 mRNA_2394 0.90 0.0
16,561 + -0.3
16,563 - -0.3
16,580 + 0.7
16,625 + 0.2
16,696 - -0.7
16,724 + -0.7
16,850 + -0.3
16,869 - -0.2
16,870 + -1.0
16,874 + -0.1
16,911 - 2.0
16,914 - -0.4
16,919 + -0.2
17,000 - 2.0
17,036 + -0.0
17,198 + 10763 mRNA_2395 0.15 -0.4
17,273 + 10763 mRNA_2395 0.19 -0.1
17,431 - 10763 mRNA_2395 0.26 -0.3
17,446 - 10763 mRNA_2395 0.27 0.6
17,449 - 10763 mRNA_2395 0.27 -0.3
17,455 + 10763 mRNA_2395 0.28 -0.0
17,652 + 10763 mRNA_2395 0.37 0.2
17,981 + 10763 mRNA_2395 0.52 0.4
18,062 - 10763 mRNA_2395 0.56 0.9
18,209 - 10763 mRNA_2395 0.63 -1.1
18,268 - 10763 mRNA_2395 0.66 -0.4
18,279 - 10763 mRNA_2395 0.66 -0.8
18,408 - 10763 mRNA_2395 0.72 0.6
18,411 + 10763 mRNA_2395 0.72 -0.5
18,500 + 10763 mRNA_2395 0.77 1.6
18,525 - 10763 mRNA_2395 0.78 0.8
18,585 - 10763 mRNA_2395 0.81 0.2
18,633 + 10763 mRNA_2395 0.83 -0.9
18,640 - 10763 mRNA_2395 0.83 0.1
18,689 - 10763 mRNA_2395 0.85 -0.7
18,772 - 10763 mRNA_2395 0.89 0.6
18,798 + 0.2
19,076 + -1.0
19,087 - -2.1
19,228 + -2.1
19,244 - -3.2
19,352 + 10764 mRNA_2396 0.12 -1.7
19,513 - 10764 mRNA_2396 0.20 -3.5
19,518 + 10764 mRNA_2396 0.20 -3.0
19,528 + 10764 mRNA_2396 0.20 -2.7
19,571 - 10764 mRNA_2396 0.22 -3.5
19,682 + 10764 mRNA_2396 0.28 -2.6
19,813 - 10764 mRNA_2396 0.34 0.0