Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2365

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2364: 10732 - K20471 COPD, ARCN1, RET2 coatomer subunit delta, at 712006 to 714085 10732 mRNA_2365: 10733 - HMMPfam-C2 domain-PF00168,HMMPfam-Munc13 (mammalian uncoordinated) homology domain-PF10540,ProSiteProfiles-Munc13-homology domain 1 (MHD1) profile.-PS51258,ProSiteProfiles-Munc13-homology domain 2 (MHD2) profile.-PS51259,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 714836 to 719439 10733 mRNA_2366: 10734 - HMMPfam-GDP/GTP exchange factor Sec2p-PF06428,SUPERFAMILY--SSF144284, at 719929 to 722612 10734

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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714,312 - 0.4
714,324 + 0.8
714,477 + 1.0
714,485 - 0.5
714,612 - -0.2
714,616 - 1.1
714,788 - 0.7
715,190 - -0.1
715,613 - 10733 mRNA_2365 0.17 -1.2
716,682 - 10733 mRNA_2365 0.40 -0.2
716,696 + 10733 mRNA_2365 0.40 -1.5
717,177 + 10733 mRNA_2365 0.51 -2.2
717,595 - 10733 mRNA_2365 0.60 -0.9
718,579 - 10733 mRNA_2365 0.81 -0.5
718,764 - 10733 mRNA_2365 0.85 -2.0
718,899 + 10733 mRNA_2365 0.88 -0.7
719,056 - -1.1
719,065 + -0.6
719,207 - 0.5
719,348 + 0.2
719,356 - 0.0
719,361 + 0.0
719,499 - -1.7
719,553 + -0.2
719,622 - -0.3
719,628 - -0.2
719,777 - 0.1
719,796 + 0.2
720,202 + 10734 mRNA_2366 0.10 0.6
720,261 + 10734 mRNA_2366 0.12 0.0
720,376 - 10734 mRNA_2366 0.17 -0.6