Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2337

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2336: 10704 - KOG0254 Predicted transporter (major facilitator superfamily), at 653967 to 656080 10704 mRNA_2337: 10705 - BLAST general substrate transporter [Wallemia mellicola..., at 656119 to 656520 10705 mRNA_2338: 10706 - K05545 DUS4 tRNA-dihydrouridine synthase 4, at 657491 to 659083 10706

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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655,397 - 10704 mRNA_2336 0.68 -0.3
655,696 + 10704 mRNA_2336 0.82 -0.1
655,989 + -0.1
656,032 - 1.6
656,275 + 10705 mRNA_2337 0.39 -2.1
656,277 - 10705 mRNA_2337 0.39 -0.3
656,283 + 10705 mRNA_2337 0.41 -0.5
656,284 - 10705 mRNA_2337 0.41 -0.0
656,373 - 10705 mRNA_2337 0.63 2.2
656,417 - 10705 mRNA_2337 0.74 0.9
656,417 - 10705 mRNA_2337 0.74 0.2
656,430 + 10705 mRNA_2337 0.77 -0.3
656,430 - 10705 mRNA_2337 0.77 -1.0
656,441 + 10705 mRNA_2337 0.80 1.9
656,474 + 10705 mRNA_2337 0.88 -0.2
656,589 + -0.7
656,589 - 0.4
656,591 - -0.2
656,606 + 0.0
656,612 + -2.2
656,626 + -0.4
656,629 - 0.2
656,629 + -0.3
656,637 - -0.6
656,663 + 0.5
656,672 + -0.5
656,672 - -0.1
656,679 - -0.2
656,682 + -0.3
656,688 + -0.7
656,724 + 0.2
656,742 + 0.2
656,755 - -1.8
656,778 - 0.3
656,791 - 0.6
656,816 - 0.0
656,816 - 0.2
656,832 + -0.6
656,856 - 1.0
656,890 - 0.3
656,899 - -0.8
656,901 - 0.7
656,921 - -0.8
656,923 - 0.1
656,923 - -0.5
656,925 - 0.1
656,930 - -0.2
656,945 + 1.3
656,960 + 0.1
656,960 - 2.2
656,961 + -0.3
656,978 + -0.3
656,978 - 0.5
656,980 - -0.2
656,987 - -0.7
656,990 + -0.3
656,992 - -0.1
656,997 - 0.2
657,029 - 0.3
657,039 + 0.4
657,067 - -0.5
657,077 + -0.1
657,085 + -0.2
657,088 - -1.0
657,123 - -0.4
657,132 + 0.0
657,157 + -0.5
657,164 + -0.7
657,165 - -1.0
657,174 - -0.6
657,175 + -0.9
657,183 + -1.5
657,191 - -0.2
657,204 + -0.0
657,216 - -0.4
657,227 + -0.1
657,234 - 1.6
657,243 - 1.7
657,244 - -0.1
657,246 - 0.3
657,257 + 0.4
657,260 - -1.3
657,265 + -0.2
657,270 - -0.1
657,284 + 0.6
657,292 + 1.7
657,292 + 0.4
657,299 + 0.6
657,308 + 0.5
657,318 + 0.9
657,324 + -0.3
657,325 - -1.2
657,335 + -1.4
657,335 - 1.0
657,421 - -1.4
657,438 - -1.2
657,451 - 1.1
657,463 + 0.6
657,463 + 1.6
657,467 + -0.1