Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2311

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2310: 10678 - HMMPfam-AhpC/TSA antioxidant enzyme-PF13911,SUPERFAMILY--SSF52833, at 577390 to 579273 10678 mRNA_2311: 10679 - K20195 MON1 vacuolar fusion protein MON1, at 580011 to 582871 10679 mRNA_2312: 10680 - K00275 pdxH, PNPO pyridoxamine 5'-phosphate oxidase, at 583261 to 584055 10680

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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579,048 - 10678 mRNA_2310 0.88 -0.2
579,153 - 1.3
579,153 + -1.2
579,280 - -0.7
579,283 + -0.4
579,304 - 0.7
579,306 - 0.6
579,310 + -1.5
579,314 + 0.9
579,319 - 0.0
579,327 - 0.4
579,333 - 1.3
579,338 - -0.0
579,343 - -0.9
579,349 + 1.9
579,355 + 0.0
579,363 + 0.1
579,428 + -0.1
579,437 + -0.5
579,440 - -0.7
579,485 + 0.6
579,486 + 0.9
579,486 - -0.5
579,495 - -0.6
579,512 + -1.0
579,531 + -0.7
579,566 + 0.2
579,650 + 0.7
579,656 - 0.7
579,660 - -0.0
579,661 - 0.1
579,667 + -0.5
579,668 + -0.1
579,690 - 0.1
579,699 - -0.3
579,700 - -1.1
579,705 + -0.2
579,707 - -2.4
579,708 - -0.3
579,708 + 0.1
579,709 + 0.8
579,713 - 0.3
579,714 - 0.7
579,714 + -0.2
579,715 - 0.1
579,724 - 0.1
579,797 - -0.0
579,867 - -0.0
580,896 - 10679 mRNA_2311 0.31 0.7
580,900 + 10679 mRNA_2311 0.31 0.6
581,206 + 10679 mRNA_2311 0.42 -1.3
582,487 + 10679 mRNA_2311 0.87 1.5
582,620 - 1.8
582,789 - -2.1
582,874 + -0.0
582,918 - -0.2
582,925 - 0.5
582,928 + 0.3
582,954 + -0.1
582,954 + 0.1
583,096 - -0.9
583,115 + 0.3
583,118 - 0.6