Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2302

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2301: 10669 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 560287 to 562676 10669 mRNA_2302: 10670 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 563015 to 564806 10670 mRNA_2303: 10671 - Hypothetical Protein, at 565712 to 566657 10671

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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562,138 - 10669 mRNA_2301 0.77 0.1
562,584 - 1.3
562,611 + -1.2
562,742 - 0.3
562,890 - -0.3
563,057 + -0.6
563,061 - 0.8
563,175 - -0.1
563,531 + 10670 mRNA_2302 0.29 -0.0
563,792 + 10670 mRNA_2302 0.43 -0.1
563,948 + 10670 mRNA_2302 0.52 -0.2
564,255 + 10670 mRNA_2302 0.69 0.3
564,390 + 10670 mRNA_2302 0.77 0.1
564,394 - 10670 mRNA_2302 0.77 -0.9
564,399 + 10670 mRNA_2302 0.77 0.6
564,408 + 10670 mRNA_2302 0.78 0.4
564,551 - 10670 mRNA_2302 0.86 0.5
564,559 + 10670 mRNA_2302 0.86 0.5
564,568 + 10670 mRNA_2302 0.87 0.5
564,576 - 10670 mRNA_2302 0.87 0.1
564,716 + 0.2
564,717 + -0.9
564,725 + -0.1
564,763 - -0.5
564,862 + 0.0
564,863 + 0.4
564,867 + -1.9
564,870 + -0.4
564,875 - -0.5
564,886 - -0.3
564,892 + 0.0
564,982 + -0.2
564,987 - -0.4
564,989 + 0.6
564,996 - -0.7
564,997 + 0.1
564,998 - 0.2
565,002 + -0.1
565,009 + -0.2
565,109 - 0.1
565,134 + -0.0
565,136 + -1.5
565,162 + -1.4
565,181 + -0.2
565,188 - 0.3
565,194 + 1.8
565,194 + -0.1
565,207 + 0.7
565,223 + 1.3
565,315 + -0.2
565,316 + -1.2
565,327 - -0.3
565,333 - -0.4
565,339 + -0.1
565,360 - -0.3
565,377 - -0.9
565,388 + 0.1
565,390 - -0.4
565,391 + -0.7
565,395 - 0.1
565,405 + 0.6
565,408 + -0.1
565,416 - -0.3
565,416 + -0.1
565,427 - -0.1
565,432 - 0.3
565,433 + 0.6
565,456 + 0.0
565,561 - -0.7
565,601 + -0.7