Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2277

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2276: 10644 - K02954 RP-S14, MRPS14, rpsN small subunit ribosomal protein S14, at 501721 to 502247 10644 mRNA_2277: 10645 - K13717 OTUD3 OTU domain-containing protein 3, at 502464 to 504545 10645 mRNA_2278: 10646 - KOG1118 Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation, at 504709 to 506668 10646

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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502,297 - 0.9
502,300 + 1.0
502,301 + 0.9
502,310 + 0.4
502,311 - -0.9
502,416 + 0.2
502,422 + -1.5
502,437 - 0.9
502,438 - -1.2
502,441 + 1.7
502,443 + -0.5
502,445 + 0.5
502,446 - 0.7
502,446 - -1.5
502,497 - -0.5
502,593 - -0.2
502,610 - -0.6
502,612 - -0.2
502,612 - 0.5
502,625 + -0.8
502,713 - 10645 mRNA_2277 0.12 0.4
502,731 - 10645 mRNA_2277 0.13 -0.4
502,737 + 10645 mRNA_2277 0.13 1.6
502,743 + 10645 mRNA_2277 0.13 -0.7
502,850 + 10645 mRNA_2277 0.19 0.9
503,364 + 10645 mRNA_2277 0.43 -0.2
503,378 + 10645 mRNA_2277 0.44 0.0
503,491 + 10645 mRNA_2277 0.49 -0.5
503,623 + 10645 mRNA_2277 0.56 -0.7
503,798 + 10645 mRNA_2277 0.64 0.2
504,244 - 10645 mRNA_2277 0.85 -0.4
504,535 - -0.7
504,809 - -0.4
504,920 + 10646 mRNA_2278 0.11 0.5
505,202 - 10646 mRNA_2278 0.25 -0.5
505,524 + 10646 mRNA_2278 0.42 1.5