Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2241

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2240: 10608 - K13291 TUT terminal uridylyltransferase, at 440002 to 443977 10608 mRNA_2241: 10609 - K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3, at 444470 to 447596 10609 mRNA_2242: 10610 - Hypothetical Protein, at 448063 to 449685 10610

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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443,538 - 10608 mRNA_2240 0.89 -0.7
443,567 - 10608 mRNA_2240 0.90 -0.5
443,681 - 0.1
443,903 + -0.0
443,951 - -0.2
443,974 - -0.5
443,981 - 0.1
443,981 + -0.5
443,984 + 0.1
444,274 + 0.1
444,296 - 0.6
444,448 + -0.0
444,459 - 1.5
444,466 + 1.4
445,831 - 10609 mRNA_2241 0.44 -0.0
445,945 - 10609 mRNA_2241 0.47 0.2
446,035 + 10609 mRNA_2241 0.50 -1.4
446,081 - 10609 mRNA_2241 0.52 -1.4
446,211 - 10609 mRNA_2241 0.56 -0.5
446,249 - 10609 mRNA_2241 0.57 -0.9
446,829 + 10609 mRNA_2241 0.75 0.3
447,221 - 10609 mRNA_2241 0.88 -0.3
447,245 - 10609 mRNA_2241 0.89 -0.2
447,345 - 0.6
447,532 - -0.0
447,548 - -1.5
447,585 + -0.7
447,666 + -0.4
447,666 + -0.9
447,667 - -0.0
447,669 + 0.3
447,671 - 2.0
447,683 - -0.6
447,689 - -0.2
447,800 + 0.5
447,808 + 1.4
447,811 - 0.1
447,840 - 0.7
447,884 + 1.3
447,892 + 0.2
447,928 + 0.1
448,015 - -0.2
448,031 - -0.2
448,043 - -0.3
448,044 + 0.1
448,044 - -0.4
448,053 - -0.6
448,073 + 0.0
448,183 + 0.1
448,184 + 0.4
448,210 + -0.5
448,217 + -0.5
448,240 - 10610 mRNA_2242 0.11 2.3
448,247 - 10610 mRNA_2242 0.11 -0.6
448,329 - 10610 mRNA_2242 0.16 0.4
448,335 + 10610 mRNA_2242 0.17 -0.2
448,339 - 10610 mRNA_2242 0.17 0.3
448,353 + 10610 mRNA_2242 0.18 0.3
448,353 + 10610 mRNA_2242 0.18 -0.8
448,358 - 10610 mRNA_2242 0.18 0.8
448,364 - 10610 mRNA_2242 0.19 -0.5
448,384 + 10610 mRNA_2242 0.20 0.8
448,403 - 10610 mRNA_2242 0.21 -0.4
448,446 + 10610 mRNA_2242 0.24 -0.1
448,478 + 10610 mRNA_2242 0.26 -1.1
448,483 - 10610 mRNA_2242 0.26 0.0
448,494 + 10610 mRNA_2242 0.27 0.6
448,497 - 10610 mRNA_2242 0.27 0.1
448,502 + 10610 mRNA_2242 0.27 0.8
448,507 + 10610 mRNA_2242 0.27 0.2