Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2209

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2208: 10576 - K13621 BTA1 betaine lipid synthase, at 355291 to 358512 10576 mRNA_2209: 10577 - K14157 AASS alpha-aminoadipic semialdehyde synthase, at 359191 to 363010 10577 mRNA_2210: 10578 - K20407 MIOS, MIO WD repeat-containing protein mio, at 363303 to 367211 10578

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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358,265 + 1.5
358,463 + -0.4
358,508 - 0.7
358,584 + -0.4
358,718 - 2.3
358,889 + -0.2
358,895 - 0.6
358,915 + 0.4
358,942 - -1.5
359,064 + 0.4
359,164 - 0.4
359,195 + -1.0
359,240 + 2.0
359,312 - -2.0
359,579 - 10577 mRNA_2209 0.10 0.3
359,787 + 10577 mRNA_2209 0.16 1.1
359,823 + 10577 mRNA_2209 0.17 -0.7
360,076 + 10577 mRNA_2209 0.23 0.8
360,526 + 10577 mRNA_2209 0.35 2.2
360,826 + 10577 mRNA_2209 0.43 -0.6
360,829 + 10577 mRNA_2209 0.43 0.2
361,254 + 10577 mRNA_2209 0.54 0.2
361,534 - 10577 mRNA_2209 0.61 1.0
361,686 - 10577 mRNA_2209 0.65 0.5
361,846 + 10577 mRNA_2209 0.70 -0.2
362,279 + 10577 mRNA_2209 0.81 -1.0
362,579 - 10577 mRNA_2209 0.89 -0.0
362,588 + 10577 mRNA_2209 0.89 -1.2
362,678 - 0.5
362,708 - -0.2
362,708 + -1.0
362,835 + -0.6
362,835 + 0.1
362,861 - -1.2
362,864 + -0.1
362,868 + 0.0
362,959 - 1.0
362,965 + -0.2
362,985 - 0.2
362,986 + 0.1
362,991 - 0.6
362,993 - 0.6
362,995 - 0.5
363,022 - 0.5
363,022 - -1.0
363,023 - 0.3
363,024 + -0.0
363,024 + 1.0
363,063 - 0.1
363,065 + 0.3
363,101 - 1.2
363,152 - 1.0
363,166 - 1.4
363,179 - -0.4
363,186 - -0.4
363,223 - -0.1
363,276 - 0.2
363,466 + -0.3
363,626 - -0.8
363,667 + 0.3
363,934 + 10578 mRNA_2210 0.16 0.5