Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2171

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2170: 10538 - K20294 COG7 conserved oligomeric Golgi complex subunit 7, at 240753 to 243794 10538 mRNA_2171: 10539 - K06877 K06877 DEAD/DEAH box helicase domain-containing protein, at 244214 to 249218 10539 mRNA_2172: 10540 - K00968 PCYT1 choline-phosphate cytidylyltransferase, at 249604 to 252159 10540

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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243,260 - 10538 mRNA_2170 0.82 0.1
243,889 + -1.0
244,018 - -1.3
244,023 - 0.1
244,023 + 1.1
244,162 + -1.0
244,163 - 1.8
244,163 - -0.1
244,182 - -0.6
244,188 + 0.1
244,272 + 0.4
244,455 - -0.6
244,489 + 0.2
244,624 - 0.3
244,626 + 0.7
245,074 + 10539 mRNA_2171 0.17 0.3
245,104 - 10539 mRNA_2171 0.18 0.4
245,111 - 10539 mRNA_2171 0.18 0.5
245,311 + 10539 mRNA_2171 0.22 0.1
245,602 - 10539 mRNA_2171 0.28 -0.0
245,605 + 10539 mRNA_2171 0.28 -0.1
245,651 + 10539 mRNA_2171 0.29 1.2
245,723 - 10539 mRNA_2171 0.30 -0.1
245,746 + 10539 mRNA_2171 0.31 0.3
245,746 - 10539 mRNA_2171 0.31 -0.5
245,773 + 10539 mRNA_2171 0.31 0.2
246,024 + 10539 mRNA_2171 0.36 0.2
246,217 - 10539 mRNA_2171 0.40 0.2
246,551 - 10539 mRNA_2171 0.47 -0.1
246,628 + 10539 mRNA_2171 0.48 -1.7
246,747 - 10539 mRNA_2171 0.51 0.9
246,759 + 10539 mRNA_2171 0.51 1.4
246,762 - 10539 mRNA_2171 0.51 -0.5
246,768 + 10539 mRNA_2171 0.51 -1.0
246,884 + 10539 mRNA_2171 0.53 0.4
247,191 - 10539 mRNA_2171 0.59 -1.0
247,352 - 10539 mRNA_2171 0.63 0.0
247,673 - 10539 mRNA_2171 0.69 0.1
247,679 + 10539 mRNA_2171 0.69 0.2
247,864 + 10539 mRNA_2171 0.73 -1.1
248,345 - 10539 mRNA_2171 0.83 -0.4
248,650 + 10539 mRNA_2171 0.89 -0.0
248,656 + 10539 mRNA_2171 0.89 -1.5
248,956 - -0.5
248,969 - -0.1
249,116 - 0.1
249,242 - -0.4
249,271 + -0.6
249,515 + 1.0
249,647 - -0.8