Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2154

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2153: 10521 - K14003 PREB, SEC12 prolactin regulatory element-binding protein, at 200588 to 202509 10521 mRNA_2154: 10522 - KOG2689 Predicted ubiquitin regulatory protein, at 202744 to 204130 10522 mRNA_2155: 10523 - Hypothetical Protein, at 204490 to 205403 10523

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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202,526 - 0.1
202,554 + 1.0
202,590 + 0.2
202,636 - -0.1
202,680 - 0.2
202,685 - 1.0
202,685 + -0.3
203,123 - 10522 mRNA_2154 0.27 0.1
203,132 - 10522 mRNA_2154 0.28 -0.3
203,282 - 10522 mRNA_2154 0.39 0.8
203,402 + 10522 mRNA_2154 0.47 -0.2
203,528 - 10522 mRNA_2154 0.57 1.9
203,603 - 10522 mRNA_2154 0.62 -0.5
203,841 + 10522 mRNA_2154 0.79 -0.1
203,911 + 10522 mRNA_2154 0.84 0.2
204,211 - 0.8
204,304 + 0.8
204,319 - -0.2
204,599 + 10523 mRNA_2155 0.12 -1.0
204,669 + 10523 mRNA_2155 0.20 1.5
204,707 + 10523 mRNA_2155 0.24 -0.7
204,711 + 10523 mRNA_2155 0.24 1.4
204,739 - 10523 mRNA_2155 0.27 -0.8
204,854 - 10523 mRNA_2155 0.40 -0.3
205,122 + 10523 mRNA_2155 0.69 0.4