Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2026

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2025: 10393 - SUPERFAMILY--SSF53474, at 773905 to 776623 10393 mRNA_2026: 10394 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 776938 to 779956 10394 mRNA_2027: 10395 - K07208 RHEB Ras homolog enriched in brain, at 780264 to 781182 10395

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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776,520 + 0.3
776,608 + -1.3
776,790 - -0.8
776,802 + 0.2
776,806 + 0.1
776,817 - 0.1
776,818 - 0.1
777,072 - -1.2
777,083 + 0.3
777,293 - 10394 mRNA_2026 0.12 -0.6
777,764 - 10394 mRNA_2026 0.27 -0.4
777,998 - 10394 mRNA_2026 0.35 0.0
778,091 + 10394 mRNA_2026 0.38 -0.5
778,141 + 10394 mRNA_2026 0.40 -0.6
778,256 - 10394 mRNA_2026 0.44 -0.4
778,691 + 10394 mRNA_2026 0.58 0.5
778,996 - 10394 mRNA_2026 0.68 0.9
779,019 - 10394 mRNA_2026 0.69 -0.5
779,136 - 10394 mRNA_2026 0.73 -0.0
779,414 - 10394 mRNA_2026 0.82 -0.1
779,703 - -0.5
779,719 - 0.9
779,729 + 0.2
779,832 + 0.2
779,841 - -0.1
779,849 - -0.9
780,011 - 0.1
780,011 + -0.8
780,025 + -1.7
780,026 - 0.1
780,027 + -0.0
780,038 - -0.6
780,041 + -0.6
780,050 + -1.6
780,061 + 0.8
780,174 - -0.6
780,177 - 0.3