Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2024

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2023: 10391 - K04718 SPHK sphingosine kinase, at 767575 to 770006 10391 mRNA_2024: 10392 - K15979 SND1 staphylococcal nuclease domain-containing protein 1, at 770180 to 773514 10392 mRNA_2025: 10393 - SUPERFAMILY--SSF53474, at 773905 to 776623 10393

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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769,267 + 10391 mRNA_2023 0.70 1.0
769,452 - 10391 mRNA_2023 0.77 -0.6
769,752 + 10391 mRNA_2023 0.90 -0.3
769,860 - -1.5
770,012 - -0.1
770,015 - -0.1
770,024 + 1.4
770,032 - -0.6
770,033 + -1.8
770,052 + 0.4
770,052 + -0.4
770,177 - -0.9
770,184 + -0.5
770,187 - 0.0
770,464 - 0.7
770,745 - 10392 mRNA_2024 0.17 -0.0
770,908 - 10392 mRNA_2024 0.22 1.7
771,044 + 10392 mRNA_2024 0.26 0.4
771,341 - 10392 mRNA_2024 0.35 -0.4
771,354 + 10392 mRNA_2024 0.35 -1.0
771,502 + 10392 mRNA_2024 0.40 -0.5
771,633 + 10392 mRNA_2024 0.44 0.0
771,655 - 10392 mRNA_2024 0.44 0.1
771,722 - 10392 mRNA_2024 0.46 0.1
772,031 + 10392 mRNA_2024 0.56 0.9
772,947 - 10392 mRNA_2024 0.83 -0.8
773,452 - -1.1
773,518 + -1.3
773,670 - -1.3
773,672 + -0.1
773,808 - 0.6
773,832 - 0.1
773,836 - 1.2
773,843 - -0.3
773,843 + 1.4
773,850 + -0.9
773,864 - 0.2
773,981 - -0.6
773,997 + 1.2
774,001 + 0.1
774,117 - -0.7
774,121 - -0.2
774,147 + 1.3
774,263 + 10393 mRNA_2025 0.13 -0.6
774,306 + 10393 mRNA_2025 0.15 -0.6
774,388 - 10393 mRNA_2025 0.18 -0.7
774,416 - 10393 mRNA_2025 0.19 -0.3
774,440 - 10393 mRNA_2025 0.20 -0.8
774,441 + 10393 mRNA_2025 0.20 0.3
774,441 + 10393 mRNA_2025 0.20 0.0