Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2023

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2022: 10390 - BLAST KLLA0F09339p [Kluyveromyces lactis], at 766628 to 767371 10390 mRNA_2023: 10391 - K04718 SPHK sphingosine kinase, at 767575 to 770006 10391 mRNA_2024: 10392 - K15979 SND1 staphylococcal nuclease domain-containing protein 1, at 770180 to 773514 10392

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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766,710 - 10390 mRNA_2022 0.11 1.1
766,725 - 10390 mRNA_2022 0.13 0.1
766,731 + 10390 mRNA_2022 0.14 0.4
766,850 + 10390 mRNA_2022 0.30 -0.0
766,988 - 10390 mRNA_2022 0.48 0.1
767,181 - 10390 mRNA_2022 0.74 2.5
767,274 + 10390 mRNA_2022 0.87 -0.9
767,415 - -0.3
767,538 - 0.2
767,710 - -0.1
767,753 + 0.3
768,148 + 10391 mRNA_2023 0.24 0.9
768,576 - 10391 mRNA_2023 0.41 -0.4
768,625 + 10391 mRNA_2023 0.43 -1.0
768,750 - 10391 mRNA_2023 0.48 -0.3
769,041 - 10391 mRNA_2023 0.60 -0.3
769,116 - 10391 mRNA_2023 0.63 0.9
769,267 + 10391 mRNA_2023 0.70 1.0
769,452 - 10391 mRNA_2023 0.77 -0.6
769,752 + 10391 mRNA_2023 0.90 -0.3
769,860 - -1.5
770,012 - -0.1
770,015 - -0.1
770,024 + 1.4
770,032 - -0.6
770,033 + -1.8
770,052 + 0.4
770,052 + -0.4
770,177 - -0.9
770,184 + -0.5
770,187 - 0.0
770,464 - 0.7
770,745 - 10392 mRNA_2024 0.17 -0.0
770,908 - 10392 mRNA_2024 0.22 1.7