Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2019

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2018: 10386 - K09554 CDC37 cell division cycle protein 37, at 758563 to 760344 10386 mRNA_2019: 10387 - K07088 K07088 uncharacterized protein, at 760625 to 762571 10387 mRNA_2020: 10388 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 762718 to 765022 10388

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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760,213 + -1.1
760,363 - 0.3
760,379 + 0.8
760,382 - -0.3
760,472 - 0.7
760,504 - -0.1
760,514 - -1.3
760,966 + 10387 mRNA_2019 0.18 -0.1
761,131 - 10387 mRNA_2019 0.26 2.2
761,179 - 10387 mRNA_2019 0.28 1.1
761,319 - 10387 mRNA_2019 0.36 -0.9
761,581 + 10387 mRNA_2019 0.49 -0.2
762,049 + 10387 mRNA_2019 0.73 0.5
762,168 + 10387 mRNA_2019 0.79 0.0
762,183 - 10387 mRNA_2019 0.80 0.3
762,185 + 10387 mRNA_2019 0.80 -0.8
762,552 - -0.4
762,590 + -0.2
762,814 + 1.2
762,874 + -0.7
762,942 - 1.2
762,985 + 10388 mRNA_2020 0.12 0.1
763,128 - 10388 mRNA_2020 0.18 1.1
763,475 - 10388 mRNA_2020 0.33 0.1