Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1998

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1997: 10365 - KOG0627 Heat shock transcription factor, at 702510 to 703691 10365 mRNA_1998: 10366 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 704179 to 706336 10366 mRNA_1999: 10367 - Hypothetical Protein, at 706788 to 707404 10367

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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703,819 + 0.6
703,907 - 0.6
703,919 - -2.3
704,071 - 0.8
704,098 - -0.3
704,101 + 0.2
704,114 + 0.2
704,249 - -0.9
704,254 + -0.1
704,296 - -0.7
704,544 - 10366 mRNA_1998 0.17 -0.4
704,554 + 10366 mRNA_1998 0.17 -0.1
704,565 - 10366 mRNA_1998 0.18 1.2
704,672 - 10366 mRNA_1998 0.23 0.6
705,128 + 10366 mRNA_1998 0.44 0.7
705,327 + 10366 mRNA_1998 0.53 -1.5
705,583 - 10366 mRNA_1998 0.65 -0.4
705,708 + 10366 mRNA_1998 0.71 -0.9
705,920 - 10366 mRNA_1998 0.81 0.2
706,128 - -0.4
706,447 + 1.1
706,849 + 0.3
706,897 + 10367 mRNA_1999 0.18 0.4
706,914 + 10367 mRNA_1999 0.20 1.0
706,916 + 10367 mRNA_1999 0.21 -0.0
707,071 + 10367 mRNA_1999 0.46 -0.5