Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1996

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1995: 10363 - KOG0062 ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b, at 699690 to 700377 10363 mRNA_1996: 10364 - KOG0379 Kelch repeat-containing proteins, at 700597 to 701909 10364 mRNA_1997: 10365 - KOG0627 Heat shock transcription factor, at 702510 to 703691 10365

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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699,707 + 0.2
699,843 - 10363 mRNA_1995 0.22 -0.2
699,942 - 10363 mRNA_1995 0.37 1.3
700,004 + 10363 mRNA_1995 0.46 -0.5
700,441 + -0.9
700,476 + -1.0
700,538 + 0.1
700,745 - 10364 mRNA_1996 0.11 -0.1
701,029 - 10364 mRNA_1996 0.33 1.6
701,042 - 10364 mRNA_1996 0.34 -0.5
701,185 + 10364 mRNA_1996 0.45 1.3
701,454 + 10364 mRNA_1996 0.65 1.3
701,862 - 0.3
701,888 - 0.1
701,905 - -0.7
701,921 + -0.2
701,926 + 1.0
701,961 - -0.3
701,988 + -0.1
702,084 - -0.1
702,089 - 0.6
702,091 + -0.5
702,234 - -0.5
702,236 - -0.5
702,243 - -0.5
702,274 + 0.3
702,282 + 0.3
702,309 - 0.1
702,333 - 0.3
702,341 - -0.5
702,354 + -0.4
702,364 + -0.2
702,365 - 0.1
702,368 + -1.1
702,380 + 1.2
702,384 + -0.3
702,408 + -1.8
702,481 + 1.5
702,500 - 0.1