Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1981

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1980: 10348 - KOG3436 60S ribosomal protein L35, at 663794 to 664282 10348 mRNA_1981: 10349 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 665074 to 666880 10349 mRNA_1982: 10350 - HMMPfam-Copper binding proteins, plastocyanin/azurin family-PF00127,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF49503, at 667248 to 669066 10350

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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664,745 + -0.3
664,792 - 0.4
664,800 - 1.3
664,883 + -0.9
665,262 - 10349 mRNA_1981 0.10 -0.1
665,408 + 10349 mRNA_1981 0.18 3.3
665,557 - 10349 mRNA_1981 0.27 0.8
665,831 + 10349 mRNA_1981 0.42 -0.1
665,955 - 10349 mRNA_1981 0.49 1.1
665,981 + 10349 mRNA_1981 0.50 1.2
666,407 - 10349 mRNA_1981 0.74 0.9
666,708 - 0.5
666,793 + 0.5
667,295 + -0.3
667,732 + 10350 mRNA_1982 0.27 1.5