Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1960

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1959: 10327 - Hypothetical Protein, at 613200 to 613373 10327 mRNA_1960: 10328 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 613593 to 615935 10328 mRNA_1961: 10329 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140, at 616368 to 617254 10329

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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612,645 - 1.0
612,667 - -0.6
612,806 + 0.5
612,821 + 1.0
613,127 + -1.0
613,434 - 0.4
613,443 + -0.4
613,762 + -0.4
614,007 - 10328 mRNA_1960 0.18 -1.0
614,067 - 10328 mRNA_1960 0.20 0.2
614,201 - 10328 mRNA_1960 0.26 -0.1
614,213 + 10328 mRNA_1960 0.26 -0.1
614,475 - 10328 mRNA_1960 0.38 0.1
615,228 - 10328 mRNA_1960 0.70 -0.2
615,343 + 10328 mRNA_1960 0.75 0.1
615,546 - 10328 mRNA_1960 0.83 -1.3
615,671 + 10328 mRNA_1960 0.89 -0.9
615,691 + 10328 mRNA_1960 0.90 -0.6
615,973 + -0.4
616,087 - 0.4
616,101 + -1.1
616,108 + 0.0
616,379 + 0.2
616,380 - -0.7
616,383 - -0.0
616,389 - 0.2
616,398 - -0.3
616,406 + -0.6
616,433 - -0.5
616,532 + 10329 mRNA_1961 0.18 0.2
616,691 - 10329 mRNA_1961 0.36 0.3