Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1927

Experiments: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525365 to 527827 10294 mRNA_1927: 10295 - K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1, at 528400 to 533209 10295

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
527,414 + 10294 mRNA_1926 0.83 -0.2
527,439 + 10294 mRNA_1926 0.84 0.6
527,441 - 10294 mRNA_1926 0.84 -1.0
527,463 + 10294 mRNA_1926 0.85 0.5
527,611 - 0.7
527,732 + 0.3
527,735 - -0.1
527,742 + 0.0
527,838 - -1.1
527,851 - 0.1
527,865 - 1.9
527,869 - -0.7
527,889 - 1.1
527,894 + 0.0
527,942 - -0.5
527,945 - 0.3
528,044 - 0.2
528,070 - -0.0
528,086 + 0.1
528,349 - -0.3
528,500 + 2.5
528,597 + -0.6
528,642 - -1.5
528,903 - 10295 mRNA_1927 0.10 -0.3
528,935 + 10295 mRNA_1927 0.11 0.7
529,048 + 10295 mRNA_1927 0.13 -1.8
529,945 - 10295 mRNA_1927 0.32 -1.6
529,953 + 10295 mRNA_1927 0.32 -2.0
529,962 - 10295 mRNA_1927 0.32 -0.2
530,126 - 10295 mRNA_1927 0.36 -1.1
530,199 - 10295 mRNA_1927 0.37 -0.6
530,266 + 10295 mRNA_1927 0.39 -0.2
530,377 + 10295 mRNA_1927 0.41 -1.3
530,511 - 10295 mRNA_1927 0.44 -0.6
530,661 + 10295 mRNA_1927 0.47 -0.2
530,804 - 10295 mRNA_1927 0.50 -1.1
530,848 + 10295 mRNA_1927 0.51 -0.1
531,254 - 10295 mRNA_1927 0.59 -0.6
531,465 + 10295 mRNA_1927 0.64 -1.0
531,554 - 10295 mRNA_1927 0.66 1.5
531,582 + 10295 mRNA_1927 0.66 -0.3
531,814 - 10295 mRNA_1927 0.71 -1.7
532,420 + 10295 mRNA_1927 0.84 0.9
532,541 - 10295 mRNA_1927 0.86 -0.5
532,542 - 10295 mRNA_1927 0.86 -0.5
532,547 + 10295 mRNA_1927 0.86 -0.9
532,838 - 0.1
532,854 + -0.1
532,857 + 0.7
532,980 + -1.6
533,002 - -0.5
533,011 + -0.3
533,013 + -0.1
533,015 - 0.1
533,017 - 0.0
533,138 + -0.1
533,154 - 0.6
533,160 - -0.1
533,173 - 0.1
533,294 + -0.1
533,297 + 0.0
533,299 - -0.6
533,316 - -1.2
533,346 - 0.5
533,439 - -0.3
533,449 - -0.4
533,452 - 0.2
533,460 - -0.7
533,465 + -1.1
533,467 - -0.5
533,471 - -0.4
533,476 - -0.6
533,479 - 0.6
533,577 + 0.1
533,582 - 0.1
533,586 - 0.0
533,590 + 0.7
533,591 + 0.6
533,600 - 0.4
533,615 - 0.1
533,617 - -0.3
533,619 + 0.1
533,621 + -1.3
533,621 + 1.0
533,624 + -0.7
533,628 + 0.1
533,650 - -0.9
533,665 - 0.4
533,671 - -0.9
533,675 + 0.9
533,677 + -0.0
533,677 - -0.0
533,677 - -0.1
533,678 - -0.3
533,680 + 0.1
533,682 - 1.9
533,687 + 0.5
533,696 - 0.3
533,699 - 0.4
533,700 + 0.4
533,701 + 0.1
533,704 + 0.1
533,705 - 0.1
533,717 - 0.0
533,721 - -1.3
533,721 + -0.8
533,722 + 0.9
533,722 + 0.4
533,765 + 0.9
533,783 + 0.4
533,792 + -0.4
533,793 - -1.4
533,814 + 0.4
533,816 - 0.2
533,822 + 1.4
533,828 - -1.1
533,843 + 1.3
533,844 - -0.1
533,855 + -0.2
533,863 + 1.5
533,864 - 0.9
533,868 + 0.3
533,879 + -0.3
533,880 - -0.0
533,892 + -0.2
533,897 + 1.0
533,897 + -0.1
533,899 + -0.4
533,903 + -0.1
533,904 + 0.5
533,905 + -0.4
533,927 - -0.4
533,931 + 0.6
533,936 + 0.7
533,938 + -0.1
533,941 + 0.3
533,957 + 0.2
534,017 - -0.4
534,017 - 0.5
534,033 + 0.1
534,047 + -0.4
534,049 - 0.8
534,053 - -0.7
534,056 + 0.3
534,057 + 1.1
534,062 - 0.6
534,063 + 0.2
534,066 + 0.4
534,069 + 1.4
534,072 + -0.0
534,075 - 0.0
534,077 - 0.9
534,077 - 0.9
534,081 + 1.7
534,086 - 0.1
534,088 - 0.5
534,091 + -1.0
534,093 - -0.8
534,095 - 0.3
534,096 + -1.7
534,101 + 1.2
534,110 + 0.4