Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1909

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1908: 10276 - K01426 E3.5.1.4, amiE amidase, at 490535 to 492598 10276 mRNA_1909: 10277 - K01426 E3.5.1.4, amiE amidase, at 493180 to 495383 10277 mRNA_1910: 10278 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 495564 to 497825 10278

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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492,198 + 10276 mRNA_1908 0.81 -0.1
492,381 + 10276 mRNA_1908 0.89 -0.7
492,681 - 1.3
492,934 + -0.4
493,073 - -0.7
493,219 + 1.2
493,266 + -0.4
493,390 + -0.1
493,540 + 10277 mRNA_1909 0.16 0.2
493,971 + 10277 mRNA_1909 0.36 0.6
494,065 + 10277 mRNA_1909 0.40 0.6
494,100 + 10277 mRNA_1909 0.42 0.4
494,112 + 10277 mRNA_1909 0.42 -0.5
494,249 + 10277 mRNA_1909 0.49 0.8
494,520 + 10277 mRNA_1909 0.61 -0.9
494,695 - 10277 mRNA_1909 0.69 1.0
495,117 - 10277 mRNA_1909 0.88 0.0
495,133 + 10277 mRNA_1909 0.89 1.1
495,135 + 10277 mRNA_1909 0.89 -0.3
495,150 - 10277 mRNA_1909 0.89 0.6
495,264 - -0.4
495,266 - 0.2
495,277 + -0.8
495,286 + -0.7
495,292 - -0.6
495,328 - -0.3
495,408 + -0.0
495,440 + 0.9
495,465 + -0.1
495,752 - -0.1
495,916 - 10278 mRNA_1910 0.16 2.1
496,028 + 10278 mRNA_1910 0.21 0.2
496,165 + 10278 mRNA_1910 0.27 0.2
496,297 + 10278 mRNA_1910 0.32 0.2
496,327 + 10278 mRNA_1910 0.34 1.7