Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1900

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1899: 10267 - K14946 RBFOX, FOX RNA binding protein fox-1, at 462869 to 464416 10267 mRNA_1900: 10268 - K15071 RCY1, POF6 recyclin-1, at 464695 to 468117 10268 mRNA_1901: 10269 - HMMPfam-Spo7-like protein-PF03907, at 468442 to 470059 10269

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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463,748 - 10267 mRNA_1899 0.57 0.7
463,748 - 10267 mRNA_1899 0.57 0.1
464,132 - 10267 mRNA_1899 0.82 0.4
464,274 - -0.8
464,583 + 0.3
464,940 - -0.9
464,984 - 1.5
465,036 + 0.0
465,347 + 10268 mRNA_1900 0.19 0.2
465,455 - 10268 mRNA_1900 0.22 -0.9
465,753 + 10268 mRNA_1900 0.31 0.6
466,444 + 10268 mRNA_1900 0.51 -0.5
467,341 - 10268 mRNA_1900 0.77 0.1
467,464 + 10268 mRNA_1900 0.81 0.1
467,570 + 10268 mRNA_1900 0.84 0.1
467,590 + 10268 mRNA_1900 0.85 0.0
467,733 - 10268 mRNA_1900 0.89 -0.3
468,105 - 0.8
468,209 + -0.5
468,247 - 0.3
468,373 - -0.1
468,375 + -0.1
468,382 + -0.3
468,383 - -0.1