Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1896

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1895: 10263 - K09247 CYP1, HAP1 heme activator protein 1, at 452374 to 455740 10263 mRNA_1896: 10264 - K00844 HK hexokinase, at 456239 to 458071 10264 mRNA_1897: 10265 - K07443 ybaZ methylated-DNA-protein-cysteine methyltransferase related protein, at 458444 to 459156 10265

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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455,244 - 10263 mRNA_1895 0.85 -0.1
455,321 - 10263 mRNA_1895 0.88 0.1
455,622 - -0.1
455,627 + -0.1
455,637 + 0.1
455,645 + -1.9
455,656 + -1.0
455,776 - 0.7
455,798 - -0.0
455,824 + -0.2
455,922 - 0.6
455,934 - -0.2
455,950 - -0.9
455,955 + -3.0
455,955 + 1.0
455,957 + 0.2
455,963 + 0.0
455,968 + 0.3
455,968 + -0.4
455,970 - -0.0
456,078 - 0.5
456,098 - -0.4
456,102 - -2.0
456,122 + 0.1
456,226 - -3.9
456,243 + -5.1
456,264 - -4.0
456,393 - -3.3
456,408 - -1.7
456,524 + 10264 mRNA_1896 0.16 -4.9
456,533 - 10264 mRNA_1896 0.16 -3.6
456,538 - 10264 mRNA_1896 0.16 -2.1
456,546 + 10264 mRNA_1896 0.17 -2.9
456,549 + 10264 mRNA_1896 0.17 -5.6
456,550 + 10264 mRNA_1896 0.17 -1.5
456,558 + 10264 mRNA_1896 0.17 -4.4
456,564 + 10264 mRNA_1896 0.18 -1.2
456,583 - 10264 mRNA_1896 0.19 -3.7
456,991 - 10264 mRNA_1896 0.41 -1.3
456,997 + 10264 mRNA_1896 0.41 -4.8
457,295 - 10264 mRNA_1896 0.58 -2.5
457,433 - 10264 mRNA_1896 0.65 -0.5
457,742 + 10264 mRNA_1896 0.82 -2.4
457,782 + 10264 mRNA_1896 0.84 -1.1
457,872 + 10264 mRNA_1896 0.89 0.3
457,906 + -4.5
458,030 - -0.9
458,032 - 0.8
458,043 - -2.7
458,044 + -0.3
458,046 + 0.5
458,047 + 0.5
458,120 + -0.3
458,122 - 0.2
458,140 - 0.4
458,175 - 0.0
458,238 + -0.3
458,250 - 0.1
458,254 - 0.7
458,257 + 0.4
458,266 + 0.5
458,294 - 0.3
458,341 + 1.0
458,343 + 1.4
458,458 - 0.0
458,459 + -0.3
458,466 - -0.0
458,483 - 1.6
458,529 - 10265 mRNA_1897 0.12 0.5
458,602 + 10265 mRNA_1897 0.22 -0.1
458,676 + 10265 mRNA_1897 0.33 0.9
458,851 + 10265 mRNA_1897 0.57 1.5
458,873 - 10265 mRNA_1897 0.60 -0.1
458,879 - 10265 mRNA_1897 0.61 0.2
458,887 + 10265 mRNA_1897 0.62 0.3
458,887 - 10265 mRNA_1897 0.62 -0.0
458,900 - 10265 mRNA_1897 0.64 0.6
458,912 - 10265 mRNA_1897 0.66 0.6
458,918 - 10265 mRNA_1897 0.66 -0.8
458,923 - 10265 mRNA_1897 0.67 0.4
458,946 + 10265 mRNA_1897 0.70 0.3
458,950 - 10265 mRNA_1897 0.71 -0.6
458,975 - 10265 mRNA_1897 0.74 1.3