Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1867

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1866: 10234 - KOG4455 Uncharacterized conserved protein, at 401287 to 402071 10234 mRNA_1867: 10235 - HMMPfam-von Willebrand factor type A domain-PF00092,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 402517 to 403659 10235 mRNA_1868: 10236 - K11569 DAD4, HSK2 DASH complex subunit DAD4, at 403783 to 404255 10236 mRNA_1869: 10237 - K14570 REX1, REXO1, RNH70 RNA exonuclease 1, at 404642 to 406231 10237

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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401,660 - 10234 mRNA_1866 0.48 0.6
401,706 + 10234 mRNA_1866 0.53 -0.3
401,972 + 10234 mRNA_1866 0.87 -0.5
401,993 + 0.8
402,104 - 0.0
402,126 + 0.3
402,181 - 1.1
402,184 + -0.5
402,246 - 0.9
402,271 + 0.8
402,279 + 0.7
402,306 - -0.4
402,332 + 0.6
402,335 - 0.1
402,444 + -0.3
402,573 + -0.3
402,868 + 10235 mRNA_1867 0.31 -1.3
403,163 + 10235 mRNA_1867 0.57 -0.5
403,313 - 10235 mRNA_1867 0.70 -1.0
403,554 + 0.8
404,320 - -0.2