Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1848

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1847: 10215 - BLAST GDP-fucose protein O-fucosyltransferase [Rhizopogon v..., at 360311 to 362309 10215 mRNA_1848: 10216 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 362950 to 364987 10216 mRNA_1849: 10217 - Hypothetical Protein, at 365239 to 367490 10217

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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362,009 - 10215 mRNA_1847 0.85 0.0
362,329 + 1.1
362,352 - 0.2
362,382 - -0.6
362,404 - 0.0
362,488 - 0.3
362,489 - -0.8
362,509 - -0.4
362,516 + 1.2
362,518 - -0.2
362,519 - 0.5
362,527 + 0.4
362,538 - 0.5
362,541 + 0.4
362,545 + -0.2
362,545 + 0.0
362,555 + 0.6
362,557 + 0.2
362,559 + -0.4
362,560 - 0.7
362,564 - 1.1
362,567 - -0.5
362,571 - 0.1
362,571 + -1.1
362,584 - -0.1
362,589 + 0.2
362,605 - -0.5
362,628 - 0.0
362,639 - 0.3
362,640 + -0.3
362,641 + 0.4
362,643 + 0.4
362,644 + -0.0
362,647 - 2.1
362,676 - 0.4
362,676 + -0.9
362,689 - -0.3
362,692 + -0.3
362,693 + 1.1
362,698 - 0.2
362,698 - 0.8
362,702 - 0.6
362,708 + 0.6
362,717 - 0.3
362,717 + 0.3
362,721 - 0.2
362,726 - -0.3
362,731 - -0.1
362,732 + -0.4
362,735 - 0.5
362,750 + 0.0
362,751 + 0.1
362,752 + 1.3
362,753 + 0.6
362,753 + 1.2
362,758 - 1.3
362,764 - 0.5
362,766 - -0.8
362,775 + -0.9
362,775 - 1.2
362,776 + -0.6
362,778 + -0.2
362,789 + 0.8
362,797 - 0.4
362,801 + -0.6
362,803 + -0.6
362,812 + -0.1
362,813 + -0.2
362,911 + 0.2
362,912 - 0.5
362,945 - -0.1
362,949 - -1.1
363,058 + -0.4
363,086 - 0.4
363,093 + 1.9
363,097 - -0.7
363,230 - 10216 mRNA_1848 0.14 0.8
363,257 + 10216 mRNA_1848 0.15 0.0
363,374 + 10216 mRNA_1848 0.21 1.4
363,587 - 10216 mRNA_1848 0.31 0.2
363,802 + 10216 mRNA_1848 0.42 -0.0
363,960 - 10216 mRNA_1848 0.50 0.9
364,241 - 10216 mRNA_1848 0.63 0.0
364,403 - 10216 mRNA_1848 0.71 0.8
364,535 + 10216 mRNA_1848 0.78 1.3
364,576 + 10216 mRNA_1848 0.80 -0.8
364,707 + 10216 mRNA_1848 0.86 -2.9
364,868 - 0.5
364,878 + -0.2
365,167 + 1.4
365,610 + 10217 mRNA_1849 0.16 0.3
365,819 - 10217 mRNA_1849 0.26 -1.5
365,855 + 10217 mRNA_1849 0.27 -0.0