Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1844

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1843: 10211 - Hypothetical Protein, at 347522 to 353659 10211 mRNA_1844: 10212 - K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase, at 353890 to 355492 10212 mRNA_1845: 10213 - K06127 COQ5 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, at 355986 to 356917 10213

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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352,896 - 10211 mRNA_1843 0.88 0.4
352,923 - 10211 mRNA_1843 0.88 0.8
352,928 + 10211 mRNA_1843 0.88 0.1
353,169 - 1.0
353,520 - 0.2
353,688 - 1.1
353,690 - 1.1
353,809 + 0.2
353,811 + -0.1
353,818 - -0.7
353,821 - -0.1
353,822 + 0.3
353,835 - -0.2
353,875 - -0.3
354,073 - 10212 mRNA_1844 0.11 0.9
354,875 - 10212 mRNA_1844 0.61 1.6
354,972 + 10212 mRNA_1844 0.67 0.3
355,019 - 10212 mRNA_1844 0.70 0.2
355,374 - 0.3
355,389 + 0.9
355,389 - -1.2
355,429 + -0.0
355,441 + -0.3
355,536 - 0.1
355,543 + 1.0
355,551 + -0.2
355,622 + 0.3