Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1817

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1816: 10184 - K08178 JEN MFS transporter, SHS family, lactate transporter, at 282501 to 284889 10184 mRNA_1817: 10185 - HMMPfam-Ring finger domain-PF13639,ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966,SUPERFAMILY--SSF57850, at 285247 to 286558 10185 mRNA_1818: 10186 - Hypothetical Protein, at 286917 to 287591 10186

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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284,484 - 10184 mRNA_1816 0.83 -0.9
284,620 + 10184 mRNA_1816 0.89 0.2
284,916 - 0.8
284,925 + 0.2
285,737 + 10185 mRNA_1817 0.37 -0.4
286,669 - -0.3
286,677 + -0.8
286,696 + 1.6
286,697 + 0.3
286,701 + -0.2
286,728 + -0.7
286,807 - -0.8
286,825 - 0.0
286,825 - -1.7
286,839 - 0.2
286,841 - 1.7
286,841 - 1.1
286,849 - -1.0
286,849 - 0.1
286,852 - -1.1
286,855 - 0.1
286,862 - -0.0
286,871 + -0.4
286,887 + 0.1
287,167 + 10186 mRNA_1818 0.37 0.8
287,172 - 10186 mRNA_1818 0.38 3.1
287,175 + 10186 mRNA_1818 0.38 0.1
287,196 - 10186 mRNA_1818 0.41 -2.8
287,199 + 10186 mRNA_1818 0.42 -1.1
287,311 - 10186 mRNA_1818 0.58 -0.4
287,331 - 10186 mRNA_1818 0.61 0.5
287,335 - 10186 mRNA_1818 0.62 -0.1
287,359 - 10186 mRNA_1818 0.65 1.4
287,382 + 10186 mRNA_1818 0.69 1.6
287,395 + 10186 mRNA_1818 0.71 -0.1
287,400 - 10186 mRNA_1818 0.72 -0.4
287,403 + 10186 mRNA_1818 0.72 0.4
287,406 + 10186 mRNA_1818 0.72 0.2
287,489 + 10186 mRNA_1818 0.85 0.0
287,533 + 1.1