Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1813

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1812: 10180 - Hypothetical Protein, at 265152 to 268202 10180 mRNA_1813: 10181 - K04352 RASA1, RASGAP Ras GTPase-activating protein 1, at 269173 to 274604 10181 mRNA_1814: 10182 - K00858 ppnK, NADK NAD+ kinase, at 275166 to 278698 10182

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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268,225 - -1.9
268,262 - -0.1
268,263 - -0.4
268,263 - 0.2
268,263 - 1.4
268,272 - 0.1
268,304 + 1.3
268,341 - -0.4
268,343 + -0.4
268,353 - -0.4
268,358 - -0.2
268,359 - 0.5
268,359 + -0.3
268,384 - -0.5
268,388 + -0.1
268,389 - -0.1
268,391 + 0.2
268,391 - -0.4
268,393 - 0.9
268,397 - -0.8
268,398 - -0.5
268,413 + 2.1
268,419 + 0.3
268,425 - -0.4
268,434 + -0.7
268,439 - 0.1
268,441 - 1.9
268,447 - 0.7
268,447 - -1.3
268,449 - -0.2
268,454 - 0.4
268,469 - 0.3
268,471 + -0.1
268,482 - 0.2
268,484 - 0.1
268,514 + 0.2
268,540 - 2.5
268,540 + -0.2
268,553 - 0.0
268,572 + 0.4
268,575 + 0.2
268,577 - 0.5
268,577 + -1.0
268,656 + 0.8
268,680 + 0.8
268,682 - -1.4
268,690 - 1.2
268,700 + 2.0
268,718 - -0.3
268,737 - -0.0
268,831 - -0.1
268,867 - 0.9
268,888 - -1.0
268,988 - -0.1
268,991 + 0.1
269,002 - 0.0
269,005 + 0.6
269,005 + 1.7
269,026 + 0.6
269,135 - -0.9
269,141 + -0.7
269,286 - 1.4
269,300 - 0.9
269,301 + -1.0
269,321 + 0.7
269,545 - -2.4
269,754 - 10181 mRNA_1813 0.11 1.5
270,563 + 10181 mRNA_1813 0.26 0.3
271,752 - 10181 mRNA_1813 0.47 0.5
272,352 - 10181 mRNA_1813 0.59 0.7
272,356 + 10181 mRNA_1813 0.59 -1.0
272,680 + 10181 mRNA_1813 0.65 0.4
274,112 + 0.4
274,633 - 0.8
274,909 + -0.3
275,050 + -0.9
275,172 - -0.8
275,184 + -0.4
275,190 + -0.6
275,190 + 0.5
275,191 + -1.4
275,199 - 0.1
275,199 + 0.1
275,200 - -0.2
275,203 + 0.1
275,207 + -0.7
275,340 - 0.2
275,342 - -0.4
275,350 + -0.4
275,353 - -0.7
275,374 - -0.7
275,512 - 0.6
275,515 - 0.8
275,520 + 10182 mRNA_1814 0.10 0.9