Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1694

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1693: 10061 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 911784 to 914454 10061 mRNA_1694: 10062 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 914848 to 915614 10062 mRNA_1695: 10063 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 916247 to 917394 10063

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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913,917 - 10061 mRNA_1693 0.80 -0.9
913,921 + 10061 mRNA_1693 0.80 -0.5
914,048 + 10061 mRNA_1693 0.85 0.8
914,114 - 10061 mRNA_1693 0.87 0.8
914,261 - -0.1
914,455 + -0.9
914,788 + 0.3
914,798 - 0.6
914,799 - -1.0
914,799 + 0.3
914,801 + 0.1
914,824 - -0.5
914,922 - -0.1
914,953 - 10062 mRNA_1694 0.14 -0.5
914,977 + 10062 mRNA_1694 0.17 0.0
915,020 - 10062 mRNA_1694 0.22 2.4
915,123 - 10062 mRNA_1694 0.36 -0.0
915,169 - 10062 mRNA_1694 0.42 0.0
915,260 - 10062 mRNA_1694 0.54 -0.6
915,435 - 10062 mRNA_1694 0.77 0.3
915,436 + 10062 mRNA_1694 0.77 1.5
915,436 - 10062 mRNA_1694 0.77 0.7
915,562 + 0.1
915,842 - 0.8
915,889 - -0.4
916,132 + -0.9
916,152 + -1.2
916,311 + -0.2
916,408 - 10063 mRNA_1695 0.14 -0.4
916,438 - 10063 mRNA_1695 0.17 0.4
916,579 + 10063 mRNA_1695 0.29 1.1
916,579 + 10063 mRNA_1695 0.29 0.2
916,588 - 10063 mRNA_1695 0.30 0.9