Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1680

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1679: 10047 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 873109 to 875707 10047 mRNA_1680: 10048 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 876384 to 878826 10048 mRNA_1681: 10049 - K03126 TAF12 transcription initiation factor TFIID subunit 12, at 879318 to 879933 10049

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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875,388 - 10047 mRNA_1679 0.88 0.3
875,470 + -0.9
875,488 + -0.3
875,722 - 1.0
875,731 + 0.6
875,901 - 0.1
875,939 - -0.2
876,033 - 0.8
876,159 - -1.1
876,375 - -0.5
876,383 + -1.0
876,601 - 2.2
876,643 - 10048 mRNA_1680 0.11 0.2
876,861 - 10048 mRNA_1680 0.20 0.4
877,048 - 10048 mRNA_1680 0.27 1.2
877,139 + 10048 mRNA_1680 0.31 -0.2
877,365 - 10048 mRNA_1680 0.40 0.3
877,378 - 10048 mRNA_1680 0.41 -0.5
877,622 - 10048 mRNA_1680 0.51 0.5
877,629 + 10048 mRNA_1680 0.51 -0.3
877,647 + 10048 mRNA_1680 0.52 1.1
877,704 + 10048 mRNA_1680 0.54 -1.5
877,799 - 10048 mRNA_1680 0.58 0.3
878,210 - 10048 mRNA_1680 0.75 0.5
878,533 - 10048 mRNA_1680 0.88 -0.2
878,565 + 10048 mRNA_1680 0.89 -0.1
878,565 + 10048 mRNA_1680 0.89 1.5
878,588 - -0.3
878,742 + -1.4
878,857 - 0.1
879,009 + -0.1
879,132 + 0.3
879,135 + 1.2
879,274 + -0.7