Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1602

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694292 to 695992 9969 mRNA_1602: 9970 - HMMPfam-Protein of unknown function (DUF2013)-PF09431, at 696270 to 698823 9970 mRNA_1603: 9971 - KOG2948 Predicted metal-binding protein, at 699316 to 700594 9971

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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695,387 - 9969 mRNA_1601 0.64 0.7
695,434 - 9969 mRNA_1601 0.67 0.3
695,443 + 9969 mRNA_1601 0.68 -1.1
695,456 - 9969 mRNA_1601 0.68 -1.5
695,583 + 9969 mRNA_1601 0.76 1.0
695,589 + 9969 mRNA_1601 0.76 0.1
695,721 - 9969 mRNA_1601 0.84 -1.6
695,861 + -2.3
695,864 - -2.7
695,886 - 0.8
695,909 - -0.9
696,056 + -3.6
696,170 - -1.8
696,187 + 0.2
696,303 - -4.0
696,352 - -1.0
696,426 + -2.1
696,513 - -1.2
696,638 + 9970 mRNA_1602 0.14 -1.6
696,736 - 9970 mRNA_1602 0.18 -0.1
696,744 - 9970 mRNA_1602 0.19 -2.2
697,021 - 9970 mRNA_1602 0.29 -2.3
697,079 + 9970 mRNA_1602 0.32 -2.7
697,084 + 9970 mRNA_1602 0.32 -3.0
697,199 - 9970 mRNA_1602 0.36 -0.8
697,364 - 9970 mRNA_1602 0.43 -1.1
697,375 - 9970 mRNA_1602 0.43 -0.2
697,389 - 9970 mRNA_1602 0.44 -1.9
697,392 + 9970 mRNA_1602 0.44 0.7
697,445 - 9970 mRNA_1602 0.46 -0.1
697,660 - 9970 mRNA_1602 0.54 -1.9
697,751 - 9970 mRNA_1602 0.58 -2.7
697,984 + 9970 mRNA_1602 0.67 -1.4
698,191 - 9970 mRNA_1602 0.75 -1.1
698,211 - 9970 mRNA_1602 0.76 -1.3
698,368 + 9970 mRNA_1602 0.82 -3.7
698,532 - 9970 mRNA_1602 0.89 -3.1
698,655 + -1.0
698,675 - -1.6
698,681 - -1.3
698,924 - -0.2
698,972 - 1.6
698,973 - -1.9
698,975 - 1.3
698,997 - -1.0
699,272 - -2.7