Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1601

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692318 to 693945 9968 mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694292 to 695992 9969 mRNA_1602: 9970 - HMMPfam-Protein of unknown function (DUF2013)-PF09431, at 696270 to 698823 9970

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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693,541 + 9968 mRNA_1600 0.75 0.1
693,667 + 9968 mRNA_1600 0.83 -2.0
693,850 - -1.9
693,867 - -1.1
694,029 - -0.4
694,041 + -3.7
694,276 - -0.3
694,756 + 9969 mRNA_1601 0.27 -4.5
695,159 + 9969 mRNA_1601 0.51 -2.1
695,182 + 9969 mRNA_1601 0.52 -1.5
695,387 - 9969 mRNA_1601 0.64 0.7
695,434 - 9969 mRNA_1601 0.67 0.3
695,443 + 9969 mRNA_1601 0.68 -1.1
695,456 - 9969 mRNA_1601 0.68 -1.5
695,583 + 9969 mRNA_1601 0.76 1.0
695,589 + 9969 mRNA_1601 0.76 0.1
695,721 - 9969 mRNA_1601 0.84 -1.6
695,861 + -2.3
695,864 - -2.7
695,886 - 0.8
695,909 - -0.9
696,056 + -3.6
696,170 - -1.8
696,187 + 0.2
696,303 - -4.0
696,352 - -1.0
696,426 + -2.1
696,513 - -1.2
696,638 + 9970 mRNA_1602 0.14 -1.6
696,736 - 9970 mRNA_1602 0.18 -0.1
696,744 - 9970 mRNA_1602 0.19 -2.2