Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1600

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1599: 9967 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 690460 to 691819 9967 mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692318 to 693945 9968 mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694292 to 695992 9969

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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691,961 + -0.3
692,058 - -1.9
692,091 + -0.8
692,110 + -0.9
692,250 + -2.4
692,383 + -2.0
692,390 + -0.4
692,787 - 9968 mRNA_1600 0.29 -1.4
692,820 - 9968 mRNA_1600 0.31 -1.8
693,541 + 9968 mRNA_1600 0.75 0.1
693,667 + 9968 mRNA_1600 0.83 -2.0
693,850 - -1.9
693,867 - -1.1
694,029 - -0.4
694,041 + -3.7
694,276 - -0.3
694,756 + 9969 mRNA_1601 0.27 -4.5