Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1599

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1598: 9966 - Hypothetical Protein, at 689711 to 690052 9966 mRNA_1599: 9967 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 690460 to 691819 9967 mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692318 to 693945 9968

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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689,508 + 0.5
689,522 + 0.4
689,565 + -1.5
689,829 + 9966 mRNA_1598 0.35 -3.1
690,286 + -1.2
690,460 - -0.9
690,549 - 0.4
690,568 + -1.7
690,833 - 9967 mRNA_1599 0.27 -1.2
690,877 - 9967 mRNA_1599 0.31 0.2
690,976 - 9967 mRNA_1599 0.38 -1.0
691,014 - 9967 mRNA_1599 0.41 -3.2
691,153 - 9967 mRNA_1599 0.51 -1.1
691,177 + 9967 mRNA_1599 0.53 -0.2
691,961 + -0.3
692,058 - -1.9
692,091 + -0.8
692,110 + -0.9
692,250 + -2.4
692,383 + -2.0
692,390 + -0.4
692,787 - 9968 mRNA_1600 0.29 -1.4