Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1591

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1590: 9958 - KOG0586 Serine/threonine protein kinase, at 669702 to 673169 9958 mRNA_1591: 9959 - K01835 pgm phosphoglucomutase, at 673406 to 675711 9959 mRNA_1592: 9960 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 676262 to 677615 9960

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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672,469 + 9958 mRNA_1590 0.80 1.1
672,696 - 9958 mRNA_1590 0.86 -1.4
672,837 - -0.2
673,130 + -2.2
673,144 - -0.4
673,170 - -2.1
673,199 + -3.7
673,221 + -1.9
673,286 + -1.8
673,290 + -0.2
673,291 - -0.9
673,295 + 0.4
673,298 + -2.9
673,303 - -3.4
673,315 + -1.3
673,316 + -0.3
673,321 + -0.6
673,322 - -1.5
673,328 - -1.6
673,337 - -1.4
673,340 - -0.1
673,343 - -0.7
673,350 - -1.5
673,350 + -2.0
673,350 + -1.1
673,352 + -2.9
673,357 + 0.5
673,357 + -2.0
673,366 + -1.9
673,481 - -0.3
673,482 + -0.4
673,492 - -2.7
673,493 + -0.6
673,510 + -0.6
673,511 + -1.0
673,633 + -0.6
673,634 - -1.2
673,652 + 9959 mRNA_1591 0.11 -1.6
673,656 + 9959 mRNA_1591 0.11 -1.7
673,657 + 9959 mRNA_1591 0.11 0.7
674,066 + 9959 mRNA_1591 0.29 -0.3
674,281 + 9959 mRNA_1591 0.38 -1.2
674,377 - 9959 mRNA_1591 0.42 0.3
674,394 - 9959 mRNA_1591 0.43 -0.1
674,529 + 9959 mRNA_1591 0.49 -1.0
674,533 + 9959 mRNA_1591 0.49 -2.4
674,709 + 9959 mRNA_1591 0.57 -2.8
674,964 + 9959 mRNA_1591 0.68 -1.3
674,981 + 9959 mRNA_1591 0.68 0.8
675,268 + 9959 mRNA_1591 0.81 0.7
675,678 + -1.1
675,821 - -1.1
675,829 - -1.3
675,847 - -1.8
675,901 + -1.5
675,995 + 0.3
676,002 + 0.8
676,003 - -1.4
676,016 + 0.4
676,115 - -0.4
676,116 - -2.8
676,120 - -1.8
676,135 - 0.5