Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1575

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1574: 9942 - K06867 K06867 uncharacterized protein, at 629129 to 634398 9942 mRNA_1575: 9943 - BLAST cipC protein [Aspergillus oryzae RIB40], at 634965 to 635420 9943 mRNA_1576: 9944 - KOG0737 AAA+-type ATPase, at 636089 to 637669 9944

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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634,446 + -1.3
634,455 + -2.8
634,456 + -1.4
634,554 - -2.2
634,573 - -2.0
634,576 - -1.7
634,580 - -0.2
634,592 - -3.8
634,639 - -1.4
634,693 - -0.8
634,716 - -3.9
634,720 - -2.5
634,723 - -0.7
634,723 + 0.0
634,725 - -3.2
634,735 - -0.9
634,744 - -0.3
634,798 + -3.6
634,802 - -2.3
634,804 - 0.5
634,820 + -3.2
634,846 - -0.7
634,900 - -0.1
635,054 + 9943 mRNA_1575 0.20 -1.3
635,074 - 9943 mRNA_1575 0.24 -1.8
635,166 + 9943 mRNA_1575 0.44 0.8
635,194 + 9943 mRNA_1575 0.50 -0.5
635,201 + 9943 mRNA_1575 0.52 -1.3
635,210 - 9943 mRNA_1575 0.54 -0.5
635,366 + 9943 mRNA_1575 0.88 -3.1
635,371 + 9943 mRNA_1575 0.89 -1.5
635,375 - -1.1
635,467 - -0.5
635,490 + -1.2
635,493 + 0.1
635,506 - -0.2
635,531 + 0.7
635,619 + -1.6
635,637 + -2.4
635,758 + -0.7
635,762 + -1.5
635,784 - -2.3
635,918 + -1.7
635,936 - -0.9
635,952 + -1.5
636,075 + -0.9
636,080 + 0.7
636,087 - -1.5
636,087 + -2.2