Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1571

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1570: 9938 - KOG2533 Permease of the major facilitator superfamily, at 617747 to 619889 9938 mRNA_1571: 9939 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 620682 to 623667 9939 mRNA_1572: 9940 - K02139 ATPeFF, ATP17 F-type H+-transporting ATPase subunit f, at 624173 to 624749 9940

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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619,852 - -0.9
619,863 - -1.4
619,991 - -0.9
620,004 - -0.1
620,019 - -1.5
620,022 - -3.8
620,028 + -1.6
620,029 - -1.5
620,029 + -1.6
620,029 + -0.5
620,029 + -2.8
620,038 - -1.7
620,042 + -0.6
620,043 - -0.8
620,044 + -0.4
620,046 + 1.7
620,054 + -0.5
620,060 + -1.4
620,087 - -0.8
620,093 - -0.8
620,094 - -1.1
620,157 + -2.0
620,172 - 0.0
620,184 + -1.7
620,190 + -1.2
620,191 + -1.8
620,214 + -0.4
620,220 - -3.6
620,240 - -2.7
620,248 + -1.4
620,284 + 0.3
620,292 + -1.4
620,295 + -1.0
620,301 + -2.8
620,305 - -3.1
620,305 + -0.9
620,305 + -1.8
620,306 - -2.9
620,308 - -2.2
620,308 + -0.8
620,311 - -0.7
620,316 - -0.4
620,322 + -1.9
620,332 - -0.9
620,336 - -1.7
620,359 + -1.0
620,359 - -0.7
620,361 - -1.3
620,361 - -0.0
620,408 + -0.7
620,421 + -1.2
620,446 - -1.4
620,468 - 0.1
620,477 + 0.2
620,480 - -1.0
620,485 + -2.2
620,489 + -2.1
620,509 + -2.2
620,517 - -1.4
620,536 + -2.8
620,607 - -1.2
620,654 - -0.5
620,667 + 0.1
621,206 - 9939 mRNA_1571 0.18 -1.7
621,213 + 9939 mRNA_1571 0.18 -3.2
622,143 - 9939 mRNA_1571 0.49 -1.4
623,148 + 9939 mRNA_1571 0.83 1.8
623,170 + 9939 mRNA_1571 0.83 -2.6
623,309 - 9939 mRNA_1571 0.88 -1.5
623,432 + -0.2
623,474 + -0.6
623,576 + -0.2
623,600 - -3.6
623,603 - -2.5
623,603 - -0.8
623,739 + -0.5
623,742 + -3.8
623,767 + -0.2
623,772 - -1.0
623,787 - -0.5
623,801 + -2.5
623,816 + -1.2
623,822 + -0.1
624,022 + -2.0
624,036 + 0.3
624,038 + -3.4
624,039 + -1.2
624,039 + -2.5
624,039 + -1.4
624,039 + -2.6
624,040 - -1.6
624,041 - -0.9
624,042 + -0.6
624,042 - -0.7
624,043 + -0.3
624,044 + -1.1
624,050 - -2.9
624,051 - -1.1
624,052 + -2.8
624,054 - 0.1
624,057 - -1.3
624,058 + -1.3
624,064 + -0.9
624,064 + -0.2
624,066 + -0.9
624,066 + -1.0
624,079 + -0.9