Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1570

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1569: 9937 - KOG3114 Uncharacterized conserved protein, at 616331 to 617555 9937 mRNA_1570: 9938 - KOG2533 Permease of the major facilitator superfamily, at 617747 to 619889 9938 mRNA_1571: 9939 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 620682 to 623667 9939

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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616,950 - 9937 mRNA_1569 0.51 -1.0
618,088 + 9938 mRNA_1570 0.16 1.9
618,105 + 9938 mRNA_1570 0.17 -2.0
618,195 + 9938 mRNA_1570 0.21 -2.0
618,232 - 9938 mRNA_1570 0.23 0.6
618,238 + 9938 mRNA_1570 0.23 -3.8
618,516 + 9938 mRNA_1570 0.36 -2.0
618,523 + 9938 mRNA_1570 0.36 -2.4
618,669 - 9938 mRNA_1570 0.43 -2.7
618,681 - 9938 mRNA_1570 0.44 -0.6
618,829 - 9938 mRNA_1570 0.50 -2.6
618,925 - 9938 mRNA_1570 0.55 -0.3
618,949 - 9938 mRNA_1570 0.56 0.0
619,013 - 9938 mRNA_1570 0.59 -0.7
619,022 + 9938 mRNA_1570 0.59 -1.7
619,127 + 9938 mRNA_1570 0.64 -1.4
619,128 - 9938 mRNA_1570 0.64 -2.0
619,139 + 9938 mRNA_1570 0.65 -1.0
619,274 + 9938 mRNA_1570 0.71 -1.5
619,429 + 9938 mRNA_1570 0.78 0.1
619,433 - 9938 mRNA_1570 0.79 -1.5
619,533 - 9938 mRNA_1570 0.83 -1.1
619,852 - -0.9
619,863 - -1.4
619,991 - -0.9
620,004 - -0.1
620,019 - -1.5
620,022 - -3.8
620,028 + -1.6
620,029 - -1.5
620,029 + -1.6
620,029 + -0.5
620,029 + -2.8
620,038 - -1.7
620,042 + -0.6
620,043 - -0.8
620,044 + -0.4
620,046 + 1.7
620,054 + -0.5
620,060 + -1.4
620,087 - -0.8
620,093 - -0.8
620,094 - -1.1
620,157 + -2.0
620,172 - 0.0
620,184 + -1.7
620,190 + -1.2
620,191 + -1.8
620,214 + -0.4
620,220 - -3.6
620,240 - -2.7
620,248 + -1.4
620,284 + 0.3
620,292 + -1.4
620,295 + -1.0
620,301 + -2.8
620,305 - -3.1
620,305 + -0.9
620,305 + -1.8
620,306 - -2.9
620,308 - -2.2
620,308 + -0.8
620,311 - -0.7
620,316 - -0.4
620,322 + -1.9
620,332 - -0.9
620,336 - -1.7
620,359 + -1.0
620,359 - -0.7
620,361 - -1.3
620,361 - -0.0
620,408 + -0.7
620,421 + -1.2
620,446 - -1.4
620,468 - 0.1
620,477 + 0.2
620,480 - -1.0
620,485 + -2.2
620,489 + -2.1
620,509 + -2.2
620,517 - -1.4
620,536 + -2.8
620,607 - -1.2
620,654 - -0.5
620,667 + 0.1