Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1560

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1559: 9927 - Hypothetical Protein, at 594333 to 596246 9927 mRNA_1560: 9928 - HMMPfam-Bromodomain-PF00439,ProSiteProfiles-Bromodomain profile.-PS50014,SMART-bromo domain-SM00297,SUPERFAMILY--SSF47370, at 596443 to 598270 9928 mRNA_1561: 9929 - K01920 gshB, GSS glutathione synthase, at 598631 to 600413 9929

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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596,116 - -3.1
596,310 - -3.2
596,323 + -1.9
596,323 + -0.6
596,417 + -2.3
596,419 + 1.4
596,424 + -2.1
596,608 - -1.6
596,814 + 9928 mRNA_1560 0.20 -2.3
597,038 + 9928 mRNA_1560 0.33 -2.2
597,579 + 9928 mRNA_1560 0.62 0.5
598,006 - 9928 mRNA_1560 0.86 -2.3
598,006 - 9928 mRNA_1560 0.86 -2.7
598,146 + 0.1
598,308 - 1.0
598,425 - -1.0
598,439 + -2.1
598,441 + -0.7
598,563 - -0.0
598,586 + -1.1
598,589 - -2.3
598,592 + -3.5
598,624 + -1.2