Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1555

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1554: 9922 - KOG1611 Predicted short chain-type dehydrogenase, at 583831 to 584732 9922 mRNA_1555: 9923 - K18703 SUGCT succinate---hydroxymethylglutarate CoA-transferase, at 585061 to 586995 9923 mRNA_1556: 9924 - KOG3114 Uncharacterized conserved protein, at 587080 to 588305 9924

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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584,185 - 9922 mRNA_1554 0.39 -0.8
584,209 + 9922 mRNA_1554 0.42 -1.1
584,760 + -1.7
584,909 - -2.2
584,914 + -3.4
584,974 - -0.1
584,994 - -0.1
584,999 + -2.7
585,004 + -0.2
585,011 + -1.8
585,020 - -2.2
585,021 - -1.7
585,023 + -2.8
585,037 + -1.7
585,164 + 1.8
585,304 + 9923 mRNA_1555 0.13 -0.3
585,317 + 9923 mRNA_1555 0.13 1.0
585,616 + 9923 mRNA_1555 0.29 -3.2
585,616 + 9923 mRNA_1555 0.29 -1.1
585,737 - 9923 mRNA_1555 0.35 -0.8
586,017 - 9923 mRNA_1555 0.49 0.4
586,368 + 9923 mRNA_1555 0.68 -0.9
586,858 + -2.3
587,619 + 9924 mRNA_1556 0.44 -2.1
587,660 - 9924 mRNA_1556 0.47 -1.4
587,794 - 9924 mRNA_1556 0.58 -1.1