Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1553

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1552: 9920 - K03115 CSNK2B casein kinase II subunit beta, at 573433 to 575580 9920 mRNA_1553: 9921 - KOG1729 FYVE finger containing protein, at 575685 to 583746 9921 mRNA_1554: 9922 - KOG1611 Predicted short chain-type dehydrogenase, at 583831 to 584732 9922

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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575,474 - -1.6
575,486 - -0.2
575,497 + -1.2
575,615 + -1.4
575,628 + -1.4
575,630 - 0.0
575,630 + 0.0
575,651 - -0.4
575,768 - -0.8
575,778 + 0.5
575,781 + -2.8
575,785 - 1.7
575,787 + -2.7
575,958 + -2.3
576,079 - -1.4
576,243 + 0.9
576,501 - 9921 mRNA_1553 0.10 -0.3
576,662 - 9921 mRNA_1553 0.12 -0.3
576,699 + 9921 mRNA_1553 0.13 -0.6
577,408 + 9921 mRNA_1553 0.21 -0.5
577,439 + 9921 mRNA_1553 0.22 -0.1
577,545 - 9921 mRNA_1553 0.23 -0.4
577,822 - 9921 mRNA_1553 0.27 2.2
577,921 + 9921 mRNA_1553 0.28 -1.6
577,961 - 9921 mRNA_1553 0.28 -1.9
577,963 - 9921 mRNA_1553 0.28 -2.5
577,981 - 9921 mRNA_1553 0.28 -0.9
577,988 + 9921 mRNA_1553 0.29 -3.3
577,990 - 9921 mRNA_1553 0.29 -0.6
577,991 - 9921 mRNA_1553 0.29 -2.3
577,993 + 9921 mRNA_1553 0.29 -3.4
577,998 + 9921 mRNA_1553 0.29 -1.2
578,001 + 9921 mRNA_1553 0.29 -2.4
578,020 + 9921 mRNA_1553 0.29 -3.3
578,112 + 9921 mRNA_1553 0.30 -2.1
578,151 - 9921 mRNA_1553 0.31 -3.1
578,169 - 9921 mRNA_1553 0.31 -2.0
578,433 + 9921 mRNA_1553 0.34 -1.8
578,438 + 9921 mRNA_1553 0.34 -1.5
578,447 - 9921 mRNA_1553 0.34 -1.5
578,878 + 9921 mRNA_1553 0.40 -1.2
579,131 - 9921 mRNA_1553 0.43 -2.4
579,308 - 9921 mRNA_1553 0.45 -1.9
579,607 - 9921 mRNA_1553 0.49 0.5
579,762 - 9921 mRNA_1553 0.51 -1.2
579,867 - 9921 mRNA_1553 0.52 0.3
581,045 + 9921 mRNA_1553 0.66 0.1
581,071 + 9921 mRNA_1553 0.67 1.7
581,185 - 9921 mRNA_1553 0.68 -0.5
581,372 + 9921 mRNA_1553 0.71 -4.0
581,484 + 9921 mRNA_1553 0.72 -3.9
581,502 - 9921 mRNA_1553 0.72 -2.3
581,504 - 9921 mRNA_1553 0.72 -0.9
581,506 + 9921 mRNA_1553 0.72 -3.1
581,521 + 9921 mRNA_1553 0.72 -0.3
581,529 - 9921 mRNA_1553 0.72 -0.8
581,530 + 9921 mRNA_1553 0.73 -0.8
581,532 + 9921 mRNA_1553 0.73 0.2
581,549 - 9921 mRNA_1553 0.73 -0.9
581,563 + 9921 mRNA_1553 0.73 0.1
581,682 + 9921 mRNA_1553 0.74 -0.4
581,703 - 9921 mRNA_1553 0.75 0.1
581,706 + 9921 mRNA_1553 0.75 -2.2
581,715 + 9921 mRNA_1553 0.75 -1.0
581,719 + 9921 mRNA_1553 0.75 -1.3
581,809 - 9921 mRNA_1553 0.76 -4.2
581,847 - 9921 mRNA_1553 0.76 -0.7
581,851 - 9921 mRNA_1553 0.76 -0.8
581,999 - 9921 mRNA_1553 0.78 -2.4
582,045 + 9921 mRNA_1553 0.79 1.6
582,165 + 9921 mRNA_1553 0.80 -0.5
582,431 - 9921 mRNA_1553 0.84 0.9
582,599 + 9921 mRNA_1553 0.86 -2.0
583,151 + 1.6
583,765 - -0.6
583,853 + -0.1
584,014 + 9922 mRNA_1554 0.20 -1.3
584,185 - 9922 mRNA_1554 0.39 -0.8
584,209 + 9922 mRNA_1554 0.42 -1.1