Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1552

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1551: 9919 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 571932 to 573047 9919 mRNA_1552: 9920 - K03115 CSNK2B casein kinase II subunit beta, at 573433 to 575580 9920 mRNA_1553: 9921 - KOG1729 FYVE finger containing protein, at 575685 to 583746 9921

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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572,547 + 9919 mRNA_1551 0.55 -1.6
572,564 - 9919 mRNA_1551 0.57 -2.6
572,685 + 9919 mRNA_1551 0.67 0.8
572,882 - 9919 mRNA_1551 0.85 -1.6
572,899 + 9919 mRNA_1551 0.87 -0.9
573,586 + -0.3
573,648 + 9920 mRNA_1552 0.10 -1.8
573,680 - 9920 mRNA_1552 0.11 -2.6
573,988 - 9920 mRNA_1552 0.26 0.1
575,474 - -1.6
575,486 - -0.2
575,497 + -1.2
575,615 + -1.4
575,628 + -1.4
575,630 - 0.0
575,630 + 0.0
575,651 - -0.4
575,768 - -0.8
575,778 + 0.5
575,781 + -2.8
575,785 - 1.7
575,787 + -2.7
575,958 + -2.3
576,079 - -1.4
576,243 + 0.9
576,501 - 9921 mRNA_1553 0.10 -0.3