Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1535

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1534: 9902 - K12493 ARFGAP2_3 ADP-ribosylation factor GTPase-activating protein 2/3, at 530272 to 532362 9902 mRNA_1535: 9903 - K12471 EPN epsin, at 532822 to 534645 9903 mRNA_1536: 9904 - K19783 HCS1 DNA polymerase alpha-associated DNA helicase A, at 534766 to 537382 9904

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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531,979 - 9902 mRNA_1534 0.82 -0.7
531,996 + 9902 mRNA_1534 0.82 -2.0
532,413 - -2.3
532,415 - -2.5
532,419 - -0.2
532,426 + -0.5
532,428 - -1.6
532,433 + -2.1
532,435 + -3.2
532,442 + 0.1
532,444 + -0.4
532,573 - -2.2
532,576 - -0.9
532,578 - -2.4
532,580 + -0.9
532,714 + -3.2
532,717 - -1.2
532,718 + -0.5
532,720 - -1.3
532,741 + -0.6
533,032 + 9903 mRNA_1535 0.12 0.1
533,325 + 9903 mRNA_1535 0.28 -2.4
533,615 + 9903 mRNA_1535 0.43 -0.6
534,236 + 9903 mRNA_1535 0.78 -1.1
534,476 + 0.4
534,492 - -0.8
534,505 - -1.2
534,751 - -1.6
534,774 + -3.2
535,529 - 9904 mRNA_1536 0.29 -1.6
535,554 + 9904 mRNA_1536 0.30 -0.1