Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1522

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1521: 9889 - HMMPfam-DNA polymerase delta, subunit 4-PF04081, at 501491 to 502163 9889 mRNA_1522: 9890 - K06685 MOB1, Mats MOB kinase activator 1, at 502826 to 504110 9890 mRNA_1523: 9891 - Hypothetical Protein, at 504257 to 504927 9891

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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501,993 + 9889 mRNA_1521 0.75 -1.0
502,138 - -1.1
502,143 + 0.1
502,147 + -0.3
502,169 - -1.2
502,170 + -1.7
502,171 - -1.1
502,314 + -1.0
502,440 - -0.8
502,441 + -3.5
502,451 + -1.3
502,457 - -3.6
502,475 + -0.8
502,575 - -1.3
502,609 + -3.1
502,611 + -1.5
502,626 + -0.3
502,899 + -0.8
503,455 - 9890 mRNA_1522 0.49 -2.2
503,475 + 9890 mRNA_1522 0.51 -0.4
503,478 - 9890 mRNA_1522 0.51 -0.8
503,488 + 9890 mRNA_1522 0.52 -1.6
503,611 + 9890 mRNA_1522 0.61 -3.5
503,886 - 9890 mRNA_1522 0.82 -1.9
504,058 + -1.6
504,075 - -1.6
504,212 + -0.7
504,353 - 9891 mRNA_1523 0.14 -0.8
504,362 - 9891 mRNA_1523 0.16 -1.9
504,363 + 9891 mRNA_1523 0.16 -3.3
504,367 - 9891 mRNA_1523 0.16 -3.8
504,367 + 9891 mRNA_1523 0.16 -3.1
504,522 + 9891 mRNA_1523 0.39 -2.2
504,806 - 9891 mRNA_1523 0.82 -0.1
504,826 + 9891 mRNA_1523 0.85 -1.1
505,105 + 1.0
505,107 + -2.8