Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1515

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1514: 9882 - K07050 AARSD1, ALAX misacylated tRNA(Ala) deacylase, at 486604 to 488267 9882 mRNA_1515: 9883 - HMMPfam-Up-regulated During Septation-PF15456,SUPERFAMILY--SSF57997, at 488446 to 491742 9883 mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492148 to 493899 9884

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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487,453 - 9882 mRNA_1514 0.51 -1.7
487,913 - 9882 mRNA_1514 0.79 -1.2
488,058 + 9882 mRNA_1514 0.87 -0.4
488,073 + 9882 mRNA_1514 0.88 -2.8
488,166 - -1.9
488,185 - 0.4
488,341 - -0.7
488,372 + -0.6
488,382 - -1.0
488,493 - -1.5
488,498 - -0.6
488,500 - -1.0
488,505 + 1.5
488,513 + -0.7
488,521 + 1.7
488,647 + -1.5
488,793 + 9883 mRNA_1515 0.11 -2.6
488,822 + 9883 mRNA_1515 0.11 -1.6
488,926 + 9883 mRNA_1515 0.15 -1.9
489,243 + 9883 mRNA_1515 0.24 -1.4
489,275 + 9883 mRNA_1515 0.25 -1.1
489,584 - 9883 mRNA_1515 0.35 -3.5
489,709 - 9883 mRNA_1515 0.38 -3.4
489,788 + 9883 mRNA_1515 0.41 -0.7
490,130 + 9883 mRNA_1515 0.51 -1.4
490,246 - 9883 mRNA_1515 0.55 -1.2
490,385 - 9883 mRNA_1515 0.59 -2.2
490,566 - 9883 mRNA_1515 0.64 -1.8
490,610 - 9883 mRNA_1515 0.66 -3.6
491,018 + 9883 mRNA_1515 0.78 -2.0
491,321 - 9883 mRNA_1515 0.87 -2.8
491,327 - 9883 mRNA_1515 0.87 -2.1
491,483 - -1.0
491,490 + -0.7
491,616 - -0.3
491,636 - -1.1
491,753 + -2.6
491,756 - -1.8
491,758 + -0.6
491,759 + -3.1
491,896 - 0.4
491,900 + 0.9
491,904 - -1.4
491,910 - -1.1
491,912 + -0.5
491,932 - -1.5
492,072 + 2.3
492,074 - -0.5
492,076 - -3.4
492,128 + -1.6
492,133 - -2.3
492,204 - -1.7