Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1508

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1507: 9875 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 469945 to 470941 9875 mRNA_1508: 9876 - KOG3140 Predicted membrane protein, at 471301 to 473619 9876 mRNA_1509: 9877 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 474155 to 475425 9877

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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470,395 + 9875 mRNA_1507 0.45 0.4
470,410 - 9875 mRNA_1507 0.47 -2.6
470,444 + 9875 mRNA_1507 0.50 -0.9
470,449 + 9875 mRNA_1507 0.51 -0.5
470,463 - 9875 mRNA_1507 0.52 -1.7
470,469 + 9875 mRNA_1507 0.53 -2.8
470,700 + 9875 mRNA_1507 0.76 -1.6
470,717 - 9875 mRNA_1507 0.77 -2.0
470,743 - 9875 mRNA_1507 0.80 -0.6
470,869 - -2.0
470,929 - -0.7
471,348 + -1.2
472,187 + 9876 mRNA_1508 0.38 -0.7
472,497 - 9876 mRNA_1508 0.52 -1.0
472,616 - 9876 mRNA_1508 0.57 -0.1
472,652 - 9876 mRNA_1508 0.58 0.4
472,917 + 9876 mRNA_1508 0.70 -3.2
473,076 + 9876 mRNA_1508 0.77 0.8
473,517 + -2.5
473,518 - -1.9
473,518 + -2.3
473,520 + -1.2
473,523 - -2.3
473,545 - -0.1
473,564 + -0.3
473,696 - -1.7
473,801 - -1.7
473,810 + -1.2
473,824 - 0.0
473,829 - -0.2
473,835 + -1.0
473,846 + -1.3
473,848 + -1.5
473,856 - -2.5
473,858 - -2.4
473,862 + 0.3
473,867 + -1.8
473,997 + -2.3
473,998 - -2.6
473,999 + -0.8
474,004 - -0.6
474,017 + -0.8
474,033 + -0.9
474,131 + -1.3
474,181 + -1.0
474,269 - -1.4
474,305 - 9877 mRNA_1509 0.12 -2.7
474,320 + 9877 mRNA_1509 0.13 -2.0
474,574 + 9877 mRNA_1509 0.33 0.1
474,594 + 9877 mRNA_1509 0.35 -1.2