Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1495

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1494: 9862 - HMMPfam-Haloacid dehalogenase-like hydrolase-PF13419,SUPERFAMILY--SSF56784, at 443115 to 444117 9862 mRNA_1495: 9863 - Hypothetical Protein, at 444439 to 447391 9863 mRNA_1496: 9864 - HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 447917 to 450188 9864

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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443,604 - 9862 mRNA_1494 0.49 -0.7
443,886 + 9862 mRNA_1494 0.77 1.3
443,915 + 9862 mRNA_1494 0.80 -1.1
444,173 - 1.2
444,315 + -1.2
444,320 - -0.4
444,329 + -0.7
444,344 - -1.5
444,451 - -2.2
444,457 + -3.9
444,491 - 0.7
444,495 - 1.1
444,496 + -0.6
444,501 - -1.2
444,632 - -1.7
444,777 - 9863 mRNA_1495 0.11 -1.4
444,931 - 9863 mRNA_1495 0.17 -1.5
444,932 - 9863 mRNA_1495 0.17 -2.2
447,245 + -1.2
447,364 - 2.1
447,385 + 0.1
447,505 + -0.0
447,551 - -0.2
447,551 - 0.7
447,656 - -1.2
447,674 + 2.1
447,674 + -0.6
447,680 - 0.8
447,693 + -2.4
447,706 + -1.2
447,712 - -0.5
447,724 - -1.6
447,726 - -1.2
447,744 - -2.3
447,746 - -0.7
447,748 + -3.4
447,751 + -2.0
447,759 - -3.0
447,773 - -2.4
447,774 + -1.7
447,774 + -0.6
447,787 + 1.6
447,795 - -1.5
447,796 + -0.2
447,797 + 0.2
447,807 - 0.1
447,814 + -0.2
447,818 - 2.2
447,864 + 0.9
447,865 - -2.3
447,868 - -0.4
447,980 - -3.1
447,983 - -3.1
447,989 - -0.1
448,013 - -1.0
448,018 + -0.4