Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1484

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1483: 9851 - BLAST Protein priB [Grifola frondosa], at 409791 to 410399 9851 mRNA_1484: 9852 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF161111, at 410749 to 412587 9852 mRNA_1485: 9853 - HMMPfam-WW domain-PF00397,ProSitePatterns-WW/rsp5/WWP domain signature.-PS01159,ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 412872 to 413936 9853

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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409,783 + -1.9
410,170 - 9851 mRNA_1483 0.62 -2.6
410,649 + -1.6
410,889 + -1.0
411,020 + 9852 mRNA_1484 0.15 -3.0
411,097 + 9852 mRNA_1484 0.19 -3.3
411,170 - 9852 mRNA_1484 0.23 -1.3
411,382 + 9852 mRNA_1484 0.34 -0.4
411,463 - 9852 mRNA_1484 0.39 -1.7
411,489 - 9852 mRNA_1484 0.40 -2.7
411,656 + 9852 mRNA_1484 0.49 -1.3
411,743 - 9852 mRNA_1484 0.54 -1.4
412,115 + 9852 mRNA_1484 0.74 -2.3
412,261 - 9852 mRNA_1484 0.82 -0.6
412,269 - 9852 mRNA_1484 0.83 -0.7
412,282 - 9852 mRNA_1484 0.83 -0.0
412,314 + 9852 mRNA_1484 0.85 -2.4
412,476 - -1.3
412,673 + -1.6
412,678 + -2.0
412,682 - -3.2
412,690 + 0.0
412,812 + -1.5
412,815 + -3.7
412,827 - -0.2
412,848 - -1.9
412,848 - 0.1
412,872 - -1.4
413,002 - 9853 mRNA_1485 0.12 -0.6
413,006 - 9853 mRNA_1485 0.13 -1.9
413,277 - 9853 mRNA_1485 0.38 -1.5
413,446 - 9853 mRNA_1485 0.54 -0.9
413,574 - 9853 mRNA_1485 0.66 -2.8