Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1483

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1482: 9850 - BLAST zn -c6 transcription factor [Malassezia pachyderm..., at 409012 to 409512 9850 mRNA_1483: 9851 - BLAST Protein priB [Grifola frondosa], at 409791 to 410399 9851 mRNA_1484: 9852 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF161111, at 410749 to 412587 9852

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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408,933 - -0.2
409,093 + 9850 mRNA_1482 0.16 -0.5
409,229 + 9850 mRNA_1482 0.43 0.2
409,381 + 9850 mRNA_1482 0.74 -4.5
409,431 - 9850 mRNA_1482 0.84 -2.0
409,456 + 9850 mRNA_1482 0.89 -0.1
409,496 - -1.9
409,527 - -0.4
409,582 + -0.8
409,737 + -3.5
409,783 + -1.9
410,170 - 9851 mRNA_1483 0.62 -2.6
410,649 + -1.6
410,889 + -1.0
411,020 + 9852 mRNA_1484 0.15 -3.0
411,097 + 9852 mRNA_1484 0.19 -3.3
411,170 - 9852 mRNA_1484 0.23 -1.3
411,382 + 9852 mRNA_1484 0.34 -0.4