Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1473

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1472: 9840 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 383411 to 384622 9840 mRNA_1473: 9841 - KOG0254 Predicted transporter (major facilitator superfamily), at 385086 to 387836 9841 mRNA_1474: 9842 - Hypothetical Protein, at 388451 to 391356 9842

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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384,529 + -3.8
384,548 + -1.7
384,653 + -2.7
384,694 + 0.4
384,713 + -1.2
384,724 + -1.8
384,777 + -2.0
384,792 - -0.1
384,814 + -2.1
384,914 + -1.6
384,930 + -1.3
384,931 + -2.4
384,938 + -1.2
384,938 + 0.5
384,968 + -1.3
384,974 - -3.3
384,985 + -0.9
384,988 - -2.5
384,991 - -4.6
384,992 + -2.0
384,996 - 1.1
385,005 - -1.5
385,062 + -1.7
385,063 - -2.7
385,070 - 2.4
385,096 - -2.7
385,098 - 1.9
385,099 + -1.1
385,119 - -0.5
385,119 - 0.4
385,119 + -1.6
385,122 + -1.1
385,131 - -2.0
385,133 + -1.1
385,134 - -0.3
385,153 + -2.8
385,219 - -0.1
385,220 - -0.4
385,261 - -2.5
385,268 + -3.3
385,271 - 0.2
385,304 + -3.2
385,398 - 9841 mRNA_1473 0.11 -0.8
385,406 - 9841 mRNA_1473 0.12 -2.7
385,423 - 9841 mRNA_1473 0.12 -2.6
385,916 - 9841 mRNA_1473 0.30 1.0
385,990 + 9841 mRNA_1473 0.33 -4.8
386,043 + 9841 mRNA_1473 0.35 0.5
386,162 + 9841 mRNA_1473 0.39 -0.4
386,318 - 9841 mRNA_1473 0.45 0.6
387,160 - 9841 mRNA_1473 0.75 0.2
387,475 + 9841 mRNA_1473 0.87 -3.9
387,634 + -0.9
387,636 + -1.0
387,740 + -1.6
387,910 + -1.3
387,940 + -1.7
388,059 - -0.8
388,062 + -3.3
388,064 - 0.7
388,199 - -0.2
388,205 - -0.5
388,219 - -0.7
388,223 - -2.5
388,229 - -0.2
388,229 + -0.8
388,230 + -0.7
388,235 - -1.5
388,235 + -3.4
388,235 + -0.1
388,238 + -2.3
388,240 + -1.8
388,246 + -0.7
388,251 + -0.8
388,255 - 0.0
388,345 + -0.8
388,365 - -2.0
388,388 + -1.5
388,396 + 0.8
388,502 - -2.9
388,670 - -2.3
388,734 - -1.9
388,795 + 9842 mRNA_1474 0.12 -1.8